Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC19.64■□□□□ 0.73
RNF41Q9H4P4 AL135744.1-201ENST00000565098 629 ntBASIC19.64■□□□□ 0.73
RNF41Q9H4P4 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC19.64■□□□□ 0.73
RNF41Q9H4P4 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
RNF41Q9H4P4 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RNF41Q9H4P4 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RNF41Q9H4P4 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
RNF41Q9H4P4 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
RNF41Q9H4P4 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC19.64■□□□□ 0.73
RNF41Q9H4P4 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
RNF41Q9H4P4 FLJ38576-201ENST00000623820 2459 ntBASIC19.64■□□□□ 0.73
RNF41Q9H4P4 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RNF41Q9H4P4 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
RNF41Q9H4P4 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
RNF41Q9H4P4 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RNF41Q9H4P4 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
RNF41Q9H4P4 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RNF41Q9H4P4 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC19.63■□□□□ 0.73
RNF41Q9H4P4 PCDHA12-202ENST00000613593 2588 ntBASIC19.63■□□□□ 0.73
RNF41Q9H4P4 NKILA-202ENST00000614771 2598 ntBASIC19.63■□□□□ 0.73
RNF41Q9H4P4 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC19.63■□□□□ 0.73
RNF41Q9H4P4 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
RNF41Q9H4P4 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
RNF41Q9H4P4 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RNF41Q9H4P4 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RNF41Q9H4P4 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC19.63■□□□□ 0.73
RNF41Q9H4P4 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC19.63■□□□□ 0.73
RNF41Q9H4P4 SPDYE11-202ENST00000450699 704 ntBASIC19.63■□□□□ 0.73
RNF41Q9H4P4 AC004967.1-201ENST00000453589 447 ntBASIC19.63■□□□□ 0.73
RNF41Q9H4P4 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC19.63■□□□□ 0.73
RNF41Q9H4P4 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC19.63■□□□□ 0.73
RNF41Q9H4P4 SPDYE9P-201ENST00000570642 692 ntBASIC19.63■□□□□ 0.73
RNF41Q9H4P4 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC19.63■□□□□ 0.73
RNF41Q9H4P4 SPDYE10P-202ENST00000612005 668 ntBASIC19.63■□□□□ 0.73
RNF41Q9H4P4 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RNF41Q9H4P4 SPDYE8P-202ENST00000612377 668 ntBASIC19.63■□□□□ 0.73
RNF41Q9H4P4 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC19.63■□□□□ 0.73
RNF41Q9H4P4 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RNF41Q9H4P4 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC19.63■□□□□ 0.73
RNF41Q9H4P4 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC19.63■□□□□ 0.73
RNF41Q9H4P4 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RNF41Q9H4P4 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RNF41Q9H4P4 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
RNF41Q9H4P4 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
RNF41Q9H4P4 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
RNF41Q9H4P4 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 AP006288.1-201ENST00000446065 395 ntBASIC19.62■□□□□ 0.73
RNF41Q9H4P4 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 AC055717.3-201ENST00000622967 595 ntBASIC19.62■□□□□ 0.73
RNF41Q9H4P4 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 GCK-202ENST00000345378 2421 ntTSL 2 BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 GGT3P-204ENST00000453783 1664 ntBASIC19.62■□□□□ 0.73
RNF41Q9H4P4 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNF41Q9H4P4 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF41Q9H4P4 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
RNF41Q9H4P4 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF41Q9H4P4 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
RNF41Q9H4P4 BSG-215ENST00000618006 1329 ntTSL 2 BASIC19.61■□□□□ 0.73
RNF41Q9H4P4 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
RNF41Q9H4P4 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF41Q9H4P4 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC19.61■□□□□ 0.73
RNF41Q9H4P4 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF41Q9H4P4 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF41Q9H4P4 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF41Q9H4P4 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF41Q9H4P4 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC19.61■□□□□ 0.73
RNF41Q9H4P4 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC19.61■□□□□ 0.73
RNF41Q9H4P4 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC19.61■□□□□ 0.73
RNF41Q9H4P4 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms