Protein–RNA interactions for Protein: Q9BT76

UPK3B, Uroplakin-3b, humanhuman

Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3BQ9BT76 NKILA-202ENST00000614771 2598 ntBASIC11.67□□□□□ -0.54
UPK3BQ9BT76 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 RPSAP43-201ENST00000402237 625 ntBASIC11.67□□□□□ -0.54
UPK3BQ9BT76 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 SLC25A6P2-201ENST00000497974 877 ntBASIC11.67□□□□□ -0.54
UPK3BQ9BT76 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 AC139530.3-201ENST00000620344 690 ntBASIC11.67□□□□□ -0.54
UPK3BQ9BT76 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 HNRNPRP1-201ENST00000453465 1695 ntBASIC11.67□□□□□ -0.54
UPK3BQ9BT76 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
UPK3BQ9BT76 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 AC022211.2-201ENST00000585075 2527 ntBASIC11.66□□□□□ -0.54
UPK3BQ9BT76 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 C1R-202ENST00000536053 2347 ntTSL 2 BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 AC093525.9-201ENST00000624961 1746 ntBASIC11.66□□□□□ -0.54
UPK3BQ9BT76 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 TCAF2P1-201ENST00000291129 2421 ntBASIC11.66□□□□□ -0.54
UPK3BQ9BT76 AC116353.5-201ENST00000638148 1699 ntBASIC11.66□□□□□ -0.54
UPK3BQ9BT76 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 AC023274.1-201ENST00000418278 595 ntBASIC11.66□□□□□ -0.54
UPK3BQ9BT76 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 MKNK2P1-201ENST00000437526 628 ntBASIC11.66□□□□□ -0.54
UPK3BQ9BT76 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 KRT19P2-202ENST00000557173 1012 ntBASIC11.66□□□□□ -0.54
UPK3BQ9BT76 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 AC018845.2-201ENST00000568326 409 ntBASIC11.66□□□□□ -0.54
UPK3BQ9BT76 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 AC004877.2-201ENST00000623941 599 ntBASIC11.66□□□□□ -0.54
UPK3BQ9BT76 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 CROCCP2-202ENST00000412962 2773 ntBASIC11.66□□□□□ -0.54
UPK3BQ9BT76 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC11.66□□□□□ -0.54
UPK3BQ9BT76 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC11.65□□□□□ -0.54
UPK3BQ9BT76 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC11.65□□□□□ -0.54
UPK3BQ9BT76 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC11.65□□□□□ -0.54
UPK3BQ9BT76 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
UPK3BQ9BT76 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
UPK3BQ9BT76 AC011676.5-201ENST00000624864 2660 ntBASIC11.65□□□□□ -0.54
UPK3BQ9BT76 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
UPK3BQ9BT76 PXK-206ENST00000463280 2825 ntTSL 2 BASIC11.65□□□□□ -0.54
UPK3BQ9BT76 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
UPK3BQ9BT76 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
UPK3BQ9BT76 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC11.65□□□□□ -0.54
UPK3BQ9BT76 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC11.65□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms