Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 GGT4P-201ENST00000623672 1708 ntBASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 HNRNPA1P40-201ENST00000426371 1278 ntBASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 AC027369.6-201ENST00000525520 931 ntBASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.68■□□□□ 0.42
PAAF1Q9BRP4 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 AC100757.3-201ENST00000622361 1406 ntBASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 FAM220BP-201ENST00000377689 816 ntBASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 MRPS18AP1-201ENST00000414458 589 ntBASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 COX20P2-201ENST00000452636 358 ntBASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 AC004890.2-204ENST00000481968 304 ntBASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 BANF1P1-201ENST00000553684 263 ntBASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 FHL2-212ENST00000607522 759 ntTSL 2 BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 AL138828.2-201ENST00000615812 383 ntBASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 AC073592.8-201ENST00000624126 511 ntBASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 LETM1P2-201ENST00000597330 2178 ntBASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 UBALD1-205ENST00000590891 2641 ntBASIC17.67■□□□□ 0.42
PAAF1Q9BRP4 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PAAF1Q9BRP4 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PAAF1Q9BRP4 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
PAAF1Q9BRP4 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms