Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
HDDC3Q8N4P3 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDDC3Q8N4P3 AC006277.1-201ENST00000624348 1610 ntBASIC16.71■□□□□ 0.27
HDDC3Q8N4P3 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HDDC3Q8N4P3 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDDC3Q8N4P3 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDDC3Q8N4P3 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDDC3Q8N4P3 MIR346-201ENST00000362234 95 ntBASIC16.71■□□□□ 0.27
HDDC3Q8N4P3 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.71■□□□□ 0.27
HDDC3Q8N4P3 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDDC3Q8N4P3 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HDDC3Q8N4P3 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC16.71■□□□□ 0.27
HDDC3Q8N4P3 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HDDC3Q8N4P3 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.71■□□□□ 0.27
HDDC3Q8N4P3 ALG1L8P-201ENST00000533887 760 ntBASIC16.71■□□□□ 0.27
HDDC3Q8N4P3 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC16.71■□□□□ 0.27
HDDC3Q8N4P3 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.71■□□□□ 0.27
HDDC3Q8N4P3 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDDC3Q8N4P3 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDDC3Q8N4P3 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDDC3Q8N4P3 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
HDDC3Q8N4P3 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.71■□□□□ 0.27
HDDC3Q8N4P3 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
HDDC3Q8N4P3 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDDC3Q8N4P3 AC008677.1-201ENST00000519230 1561 ntBASIC16.71■□□□□ 0.27
HDDC3Q8N4P3 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDDC3Q8N4P3 AC020916.1-201ENST00000587762 1774 ntBASIC16.71■□□□□ 0.27
HDDC3Q8N4P3 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
HDDC3Q8N4P3 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
HDDC3Q8N4P3 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 UGT1A2P-201ENST00000454886 866 ntBASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 COQ6-210ENST00000554920 649 ntTSL 3 BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 NKG7-205ENST00000600427 520 ntTSL 3 BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 HFE2-206ENST00000634927 506 ntTSL 4 BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HDDC3Q8N4P3 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HDDC3Q8N4P3 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.69■□□□□ 0.26
HDDC3Q8N4P3 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.69■□□□□ 0.26
HDDC3Q8N4P3 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.69■□□□□ 0.26
HDDC3Q8N4P3 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HDDC3Q8N4P3 AL671710.1-201ENST00000610245 2349 ntBASIC16.69■□□□□ 0.26
HDDC3Q8N4P3 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HDDC3Q8N4P3 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
HDDC3Q8N4P3 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC16.69■□□□□ 0.26
HDDC3Q8N4P3 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
HDDC3Q8N4P3 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
HDDC3Q8N4P3 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HDDC3Q8N4P3 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
HDDC3Q8N4P3 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HDDC3Q8N4P3 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HDDC3Q8N4P3 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HDDC3Q8N4P3 RAC2-204ENST00000406508 893 ntTSL 5 BASIC16.69■□□□□ 0.26
HDDC3Q8N4P3 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HDDC3Q8N4P3 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.69■□□□□ 0.26
HDDC3Q8N4P3 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.69■□□□□ 0.26
HDDC3Q8N4P3 AC069120.2-201ENST00000524091 540 ntBASIC16.69■□□□□ 0.26
HDDC3Q8N4P3 GATD1-206ENST00000526325 756 ntTSL 5 BASIC16.69■□□□□ 0.26
HDDC3Q8N4P3 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.69■□□□□ 0.26
HDDC3Q8N4P3 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC16.69■□□□□ 0.26
HDDC3Q8N4P3 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HDDC3Q8N4P3 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.69■□□□□ 0.26
HDDC3Q8N4P3 AL158211.3-201ENST00000607385 239 ntBASIC16.69■□□□□ 0.26
HDDC3Q8N4P3 AL008721.1-201ENST00000609964 604 ntBASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms