Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 PKD1P5-201ENST00000532415 10291 ntBASIC18.12■□□□□ 0.49
VPS52Q8N1B4 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS52Q8N1B4 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS52Q8N1B4 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS52Q8N1B4 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC18.11■□□□□ 0.49
VPS52Q8N1B4 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VPS52Q8N1B4 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS52Q8N1B4 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS52Q8N1B4 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS52Q8N1B4 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC18.11■□□□□ 0.49
VPS52Q8N1B4 CNN2P2-201ENST00000443536 909 ntBASIC18.11■□□□□ 0.49
VPS52Q8N1B4 CNN2P3-201ENST00000450201 906 ntBASIC18.11■□□□□ 0.49
VPS52Q8N1B4 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS52Q8N1B4 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC18.11■□□□□ 0.49
VPS52Q8N1B4 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC18.11■□□□□ 0.49
VPS52Q8N1B4 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
VPS52Q8N1B4 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC18.11■□□□□ 0.49
VPS52Q8N1B4 MIR4745-201ENST00000577608 62 ntBASIC18.11■□□□□ 0.49
VPS52Q8N1B4 AC005412.3-201ENST00000580309 715 ntBASIC18.11■□□□□ 0.49
VPS52Q8N1B4 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC18.11■□□□□ 0.49
VPS52Q8N1B4 AL136317.3-201ENST00000618497 906 ntBASIC18.11■□□□□ 0.49
VPS52Q8N1B4 AL161645.1-201ENST00000622716 1255 ntBASIC18.11■□□□□ 0.49
VPS52Q8N1B4 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
VPS52Q8N1B4 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS52Q8N1B4 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS52Q8N1B4 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS52Q8N1B4 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS52Q8N1B4 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS52Q8N1B4 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
VPS52Q8N1B4 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS52Q8N1B4 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS52Q8N1B4 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC18.11■□□□□ 0.49
VPS52Q8N1B4 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS52Q8N1B4 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VPS52Q8N1B4 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS52Q8N1B4 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS52Q8N1B4 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VPS52Q8N1B4 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS52Q8N1B4 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS52Q8N1B4 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS52Q8N1B4 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
VPS52Q8N1B4 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VPS52Q8N1B4 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC18.1■□□□□ 0.49
VPS52Q8N1B4 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
VPS52Q8N1B4 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC18.1■□□□□ 0.49
VPS52Q8N1B4 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VPS52Q8N1B4 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS52Q8N1B4 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VPS52Q8N1B4 AC093214.1-201ENST00000511688 1107 ntBASIC18.1■□□□□ 0.49
VPS52Q8N1B4 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VPS52Q8N1B4 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC18.1■□□□□ 0.49
VPS52Q8N1B4 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VPS52Q8N1B4 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC18.1■□□□□ 0.49
VPS52Q8N1B4 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS52Q8N1B4 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VPS52Q8N1B4 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS52Q8N1B4 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
VPS52Q8N1B4 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
VPS52Q8N1B4 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VPS52Q8N1B4 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 AC012569.1-201ENST00000591191 1524 ntBASIC18.09■□□□□ 0.49
VPS52Q8N1B4 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 RNA5SP421-201ENST00000516864 134 ntBASIC18.09■□□□□ 0.49
VPS52Q8N1B4 CFL1-212ENST00000531413 636 ntTSL 3 BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms