Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
VPS13CQ709C8 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS13CQ709C8 FOS-208ENST00000555686 1496 ntTSL 2 BASIC13.69□□□□□ -0.22
VPS13CQ709C8 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS13CQ709C8 AL589987.1-201ENST00000453380 819 ntBASIC13.69□□□□□ -0.22
VPS13CQ709C8 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
VPS13CQ709C8 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC13.69□□□□□ -0.22
VPS13CQ709C8 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC13.69□□□□□ -0.22
VPS13CQ709C8 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC13.69□□□□□ -0.22
VPS13CQ709C8 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC13.69□□□□□ -0.22
VPS13CQ709C8 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS13CQ709C8 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC13.69□□□□□ -0.22
VPS13CQ709C8 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS13CQ709C8 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS13CQ709C8 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
VPS13CQ709C8 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
VPS13CQ709C8 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
VPS13CQ709C8 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
VPS13CQ709C8 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS13CQ709C8 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS13CQ709C8 SLC25A1P3-201ENST00000395415 828 ntBASIC13.69□□□□□ -0.22
VPS13CQ709C8 AC099336.1-201ENST00000417053 1171 ntBASIC13.69□□□□□ -0.22
VPS13CQ709C8 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC13.69□□□□□ -0.22
VPS13CQ709C8 RN7SL828P-201ENST00000607615 303 ntBASIC13.69□□□□□ -0.22
VPS13CQ709C8 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC13.69□□□□□ -0.22
VPS13CQ709C8 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC13.69□□□□□ -0.22
VPS13CQ709C8 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS13CQ709C8 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13CQ709C8 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13CQ709C8 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
VPS13CQ709C8 AL136982.4-201ENST00000437689 1740 ntBASIC13.68□□□□□ -0.22
VPS13CQ709C8 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
VPS13CQ709C8 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC13.68□□□□□ -0.22
VPS13CQ709C8 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC13.68□□□□□ -0.22
VPS13CQ709C8 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13CQ709C8 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC13.68□□□□□ -0.22
VPS13CQ709C8 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC13.68□□□□□ -0.22
VPS13CQ709C8 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
VPS13CQ709C8 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13CQ709C8 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13CQ709C8 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC13.68□□□□□ -0.22
VPS13CQ709C8 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC13.68□□□□□ -0.22
VPS13CQ709C8 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13CQ709C8 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13CQ709C8 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
VPS13CQ709C8 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13CQ709C8 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13CQ709C8 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13CQ709C8 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC13.68□□□□□ -0.22
VPS13CQ709C8 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13CQ709C8 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC13.68□□□□□ -0.22
VPS13CQ709C8 MPDU1-223ENST00000582151 728 ntBASIC13.68□□□□□ -0.22
VPS13CQ709C8 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC13.68□□□□□ -0.22
VPS13CQ709C8 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13CQ709C8 GGT4P-201ENST00000623672 1708 ntBASIC13.68□□□□□ -0.22
VPS13CQ709C8 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13CQ709C8 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13CQ709C8 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13CQ709C8 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13CQ709C8 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13CQ709C8 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13CQ709C8 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC13.68□□□□□ -0.22
VPS13CQ709C8 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC13.68□□□□□ -0.22
VPS13CQ709C8 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
VPS13CQ709C8 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC13.68□□□□□ -0.22
VPS13CQ709C8 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC13.68□□□□□ -0.22
VPS13CQ709C8 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13CQ709C8 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13CQ709C8 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13CQ709C8 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC13.67□□□□□ -0.22
VPS13CQ709C8 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC13.67□□□□□ -0.22
VPS13CQ709C8 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC13.67□□□□□ -0.22
VPS13CQ709C8 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13CQ709C8 HAUS4P1-201ENST00000406739 1145 ntBASIC13.67□□□□□ -0.22
VPS13CQ709C8 USB1-202ENST00000423271 1217 ntTSL 2 BASIC13.67□□□□□ -0.22
VPS13CQ709C8 AC123567.1-201ENST00000548294 1261 ntBASIC13.67□□□□□ -0.22
VPS13CQ709C8 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC13.67□□□□□ -0.22
VPS13CQ709C8 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13CQ709C8 AL021578.1-201ENST00000613646 709 ntBASIC13.67□□□□□ -0.22
VPS13CQ709C8 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
VPS13CQ709C8 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13CQ709C8 EGFEM1P-202ENST00000431685 1563 ntBASIC13.67□□□□□ -0.22
VPS13CQ709C8 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC13.67□□□□□ -0.22
VPS13CQ709C8 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC13.67□□□□□ -0.22
VPS13CQ709C8 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13CQ709C8 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13CQ709C8 RPS19-201ENST00000221975 500 ntTSL 3 BASIC13.67□□□□□ -0.22
VPS13CQ709C8 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13CQ709C8 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13CQ709C8 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC13.67□□□□□ -0.22
VPS13CQ709C8 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC13.67□□□□□ -0.22
VPS13CQ709C8 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC13.67□□□□□ -0.22
VPS13CQ709C8 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC13.67□□□□□ -0.22
VPS13CQ709C8 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
VPS13CQ709C8 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC13.67□□□□□ -0.22
VPS13CQ709C8 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13CQ709C8 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13CQ709C8 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13CQ709C8 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC13.67□□□□□ -0.22
VPS13CQ709C8 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms