Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SYNE3Q6ZMZ3 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC19.67■□□□□ 0.74
SYNE3Q6ZMZ3 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 STARD13-205ENST00000439831 945 ntTSL 2 BASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 AL591424.1-201ENST00000442569 1213 ntBASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 RNA5SP416-201ENST00000516838 111 ntBASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 AC010507.1-201ENST00000633895 436 ntBASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 AL645728.2-201ENST00000641974 660 ntBASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SYNE3Q6ZMZ3 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 MED15P5-201ENST00000423150 992 ntBASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 WDR53-204ENST00000433160 887 ntTSL 5 BASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 HLA-J-202ENST00000469281 1241 ntBASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 AC023141.13-201ENST00000604991 943 ntBASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 UBALD1-205ENST00000590891 2641 ntBASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SYNE3Q6ZMZ3 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SYNE3Q6ZMZ3 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SYNE3Q6ZMZ3 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
SYNE3Q6ZMZ3 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SYNE3Q6ZMZ3 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SYNE3Q6ZMZ3 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SYNE3Q6ZMZ3 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SYNE3Q6ZMZ3 AL022342.1-201ENST00000400363 863 ntBASIC19.64■□□□□ 0.73
SYNE3Q6ZMZ3 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
SYNE3Q6ZMZ3 RHOQP3-201ENST00000437982 621 ntBASIC19.64■□□□□ 0.73
SYNE3Q6ZMZ3 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC19.64■□□□□ 0.73
SYNE3Q6ZMZ3 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC19.64■□□□□ 0.73
SYNE3Q6ZMZ3 AL031432.2-201ENST00000566714 459 ntBASIC19.64■□□□□ 0.73
SYNE3Q6ZMZ3 AL928711.1-201ENST00000570165 459 ntBASIC19.64■□□□□ 0.73
SYNE3Q6ZMZ3 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SYNE3Q6ZMZ3 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC19.64■□□□□ 0.73
SYNE3Q6ZMZ3 FAM197Y3-203ENST00000618346 717 ntBASIC19.64■□□□□ 0.73
SYNE3Q6ZMZ3 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SYNE3Q6ZMZ3 AC006538.1-201ENST00000567905 1585 ntBASIC19.64■□□□□ 0.73
SYNE3Q6ZMZ3 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
SYNE3Q6ZMZ3 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SYNE3Q6ZMZ3 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
SYNE3Q6ZMZ3 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
SYNE3Q6ZMZ3 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC19.64■□□□□ 0.73
SYNE3Q6ZMZ3 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
SYNE3Q6ZMZ3 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC19.64■□□□□ 0.73
SYNE3Q6ZMZ3 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC19.64■□□□□ 0.73
SYNE3Q6ZMZ3 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SYNE3Q6ZMZ3 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms