Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 PRSS29P-201ENST00000440800 595 ntBASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 AC112482.1-201ENST00000492080 688 ntBASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 MAL2-202ENST00000531508 892 ntTSL 3 BASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 OR7E47P-204ENST00000575924 449 ntBASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 MIR3687-2-201ENST00000577708 61 ntBASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 CYB561-216ENST00000582297 897 ntTSL 3 BASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 MIR3687-1-201ENST00000614492 61 ntBASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 SNX33P1-201ENST00000592116 1762 ntBASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTCHD3Q3KNS1 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 IGLL3P-201ENST00000412472 434 ntBASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 CYP51A1P2-201ENST00000419457 1499 ntBASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 CICP6-201ENST00000457191 2729 ntBASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 DHDH-204ENST00000523250 634 ntTSL 5 BASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 AL353732.1-201ENST00000569618 1459 ntBASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 AC010654.1-201ENST00000615722 808 ntBASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 AC092865.6-201ENST00000642101 219 ntBASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD3Q3KNS1 AL671710.1-201ENST00000610245 2349 ntBASIC16.31■□□□□ 0.2
PTCHD3Q3KNS1 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD3Q3KNS1 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.31■□□□□ 0.2
PTCHD3Q3KNS1 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD3Q3KNS1 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD3Q3KNS1 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
PTCHD3Q3KNS1 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
PTCHD3Q3KNS1 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
PTCHD3Q3KNS1 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD3Q3KNS1 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD3Q3KNS1 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.31■□□□□ 0.2
PTCHD3Q3KNS1 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD3Q3KNS1 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.31■□□□□ 0.2
PTCHD3Q3KNS1 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC16.31■□□□□ 0.2
PTCHD3Q3KNS1 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.31■□□□□ 0.2
PTCHD3Q3KNS1 RPS8P6-201ENST00000426177 609 ntBASIC16.31■□□□□ 0.2
PTCHD3Q3KNS1 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC16.31■□□□□ 0.2
PTCHD3Q3KNS1 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC16.31■□□□□ 0.2
PTCHD3Q3KNS1 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.31■□□□□ 0.2
PTCHD3Q3KNS1 AC005412.3-201ENST00000580309 715 ntBASIC16.31■□□□□ 0.2
PTCHD3Q3KNS1 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC16.31■□□□□ 0.2
PTCHD3Q3KNS1 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC16.31■□□□□ 0.2
PTCHD3Q3KNS1 AL513190.1-201ENST00000621254 727 ntBASIC16.31■□□□□ 0.2
PTCHD3Q3KNS1 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD3Q3KNS1 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD3Q3KNS1 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD3Q3KNS1 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.31■□□□□ 0.2
PTCHD3Q3KNS1 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
PTCHD3Q3KNS1 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
PTCHD3Q3KNS1 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD3Q3KNS1 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms