Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 VN2R19P-201ENST00000442399 1052 ntBASIC16.11■□□□□ 0.17
PCDH1Q08174 AC108751.1-201ENST00000490852 363 ntBASIC16.11■□□□□ 0.17
PCDH1Q08174 CXCL1P1-201ENST00000502804 216 ntBASIC16.11■□□□□ 0.17
PCDH1Q08174 AC093909.1-201ENST00000504731 1122 ntBASIC16.11■□□□□ 0.17
PCDH1Q08174 UNC93B6-202ENST00000528242 690 ntBASIC16.11■□□□□ 0.17
PCDH1Q08174 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC16.11■□□□□ 0.17
PCDH1Q08174 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC16.11■□□□□ 0.17
PCDH1Q08174 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.11■□□□□ 0.17
PCDH1Q08174 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.11■□□□□ 0.17
PCDH1Q08174 TCAP-202ENST00000578283 583 ntTSL 5 BASIC16.11■□□□□ 0.17
PCDH1Q08174 AL121894.2-201ENST00000602977 491 ntBASIC16.11■□□□□ 0.17
PCDH1Q08174 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.11■□□□□ 0.17
PCDH1Q08174 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH1Q08174 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH1Q08174 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH1Q08174 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDH1Q08174 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
PCDH1Q08174 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
PCDH1Q08174 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH1Q08174 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH1Q08174 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC16.1■□□□□ 0.17
PCDH1Q08174 AC008894.3-201ENST00000624324 3103 ntBASIC16.1■□□□□ 0.17
PCDH1Q08174 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH1Q08174 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
PCDH1Q08174 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
PCDH1Q08174 AC012569.1-201ENST00000591191 1524 ntBASIC16.1■□□□□ 0.17
PCDH1Q08174 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH1Q08174 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
PCDH1Q08174 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH1Q08174 MTHFR-217ENST00000641820 1569 ntBASIC16.1■□□□□ 0.17
PCDH1Q08174 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
PCDH1Q08174 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH1Q08174 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH1Q08174 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH1Q08174 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
PCDH1Q08174 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
PCDH1Q08174 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH1Q08174 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.1■□□□□ 0.17
PCDH1Q08174 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC16.1■□□□□ 0.17
PCDH1Q08174 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.1■□□□□ 0.17
PCDH1Q08174 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.1■□□□□ 0.17
PCDH1Q08174 POLD4-207ENST00000531239 584 ntTSL 2 BASIC16.1■□□□□ 0.17
PCDH1Q08174 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH1Q08174 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
PCDH1Q08174 CYB561-216ENST00000582297 897 ntTSL 3 BASIC16.1■□□□□ 0.17
PCDH1Q08174 AL645728.2-201ENST00000641974 660 ntBASIC16.1■□□□□ 0.17
PCDH1Q08174 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.1■□□□□ 0.17
PCDH1Q08174 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
PCDH1Q08174 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH1Q08174 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH1Q08174 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH1Q08174 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH1Q08174 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH1Q08174 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH1Q08174 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
PCDH1Q08174 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.1■□□□□ 0.17
PCDH1Q08174 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH1Q08174 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
PCDH1Q08174 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH1Q08174 UBALD1-205ENST00000590891 2641 ntBASIC16.1■□□□□ 0.17
PCDH1Q08174 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH1Q08174 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH1Q08174 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
PCDH1Q08174 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDH1Q08174 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.09■□□□□ 0.17
PCDH1Q08174 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.09■□□□□ 0.17
PCDH1Q08174 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH1Q08174 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH1Q08174 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
PCDH1Q08174 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
PCDH1Q08174 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH1Q08174 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH1Q08174 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH1Q08174 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH1Q08174 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH1Q08174 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
PCDH1Q08174 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH1Q08174 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH1Q08174 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.09■□□□□ 0.17
PCDH1Q08174 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.09■□□□□ 0.17
PCDH1Q08174 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.09■□□□□ 0.17
PCDH1Q08174 GPAA1P2-202ENST00000606848 1787 ntBASIC16.09■□□□□ 0.17
PCDH1Q08174 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.09■□□□□ 0.17
PCDH1Q08174 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH1Q08174 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.09■□□□□ 0.17
PCDH1Q08174 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC16.09■□□□□ 0.17
PCDH1Q08174 RHOQP3-201ENST00000437982 621 ntBASIC16.09■□□□□ 0.17
PCDH1Q08174 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC16.09■□□□□ 0.17
PCDH1Q08174 HCG4B-203ENST00000450128 991 ntBASIC16.09■□□□□ 0.17
PCDH1Q08174 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.09■□□□□ 0.17
PCDH1Q08174 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC16.09■□□□□ 0.17
PCDH1Q08174 AC079776.4-201ENST00000511039 504 ntBASIC16.09■□□□□ 0.17
PCDH1Q08174 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.09■□□□□ 0.17
PCDH1Q08174 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
PCDH1Q08174 AC145285.3-201ENST00000564603 959 ntBASIC16.09■□□□□ 0.17
PCDH1Q08174 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
PCDH1Q08174 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH1Q08174 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
PCDH1Q08174 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH1Q08174 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms