Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
HSPG2P98160 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC10.12□□□□□ -0.79
HSPG2P98160 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
HSPG2P98160 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
HSPG2P98160 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC10.12□□□□□ -0.79
HSPG2P98160 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
HSPG2P98160 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
HSPG2P98160 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
HSPG2P98160 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC10.12□□□□□ -0.79
HSPG2P98160 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC10.12□□□□□ -0.79
HSPG2P98160 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC10.12□□□□□ -0.79
HSPG2P98160 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC10.12□□□□□ -0.79
HSPG2P98160 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC10.12□□□□□ -0.79
HSPG2P98160 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC10.12□□□□□ -0.79
HSPG2P98160 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
HSPG2P98160 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
HSPG2P98160 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
HSPG2P98160 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
HSPG2P98160 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC10.12□□□□□ -0.79
HSPG2P98160 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
HSPG2P98160 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC10.12□□□□□ -0.79
HSPG2P98160 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC10.12□□□□□ -0.79
HSPG2P98160 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC10.12□□□□□ -0.79
HSPG2P98160 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
HSPG2P98160 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
HSPG2P98160 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
HSPG2P98160 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
HSPG2P98160 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC10.11□□□□□ -0.79
HSPG2P98160 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC10.11□□□□□ -0.79
HSPG2P98160 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC10.11□□□□□ -0.79
HSPG2P98160 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC10.11□□□□□ -0.79
HSPG2P98160 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC10.11□□□□□ -0.79
HSPG2P98160 CSH2-202ENST00000345366 598 ntTSL 5 BASIC10.11□□□□□ -0.79
HSPG2P98160 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC10.11□□□□□ -0.79
HSPG2P98160 FNTAP2-201ENST00000430308 634 ntBASIC10.11□□□□□ -0.79
HSPG2P98160 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC10.11□□□□□ -0.79
HSPG2P98160 RERG-205ENST00000537647 935 ntTSL 2 BASIC10.11□□□□□ -0.79
HSPG2P98160 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC10.11□□□□□ -0.79
HSPG2P98160 AC005252.2-201ENST00000624630 1141 ntBASIC10.11□□□□□ -0.79
HSPG2P98160 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
HSPG2P98160 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
HSPG2P98160 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
HSPG2P98160 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC10.11□□□□□ -0.79
HSPG2P98160 HARS-202ENST00000415192 1401 ntTSL 2 BASIC10.11□□□□□ -0.79
HSPG2P98160 USP49-202ENST00000373010 2446 ntTSL 5 BASIC10.11□□□□□ -0.79
HSPG2P98160 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
HSPG2P98160 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
HSPG2P98160 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC10.11□□□□□ -0.79
HSPG2P98160 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
HSPG2P98160 AC108860.2-201ENST00000562760 2183 ntBASIC10.11□□□□□ -0.79
HSPG2P98160 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
HSPG2P98160 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC10.11□□□□□ -0.79
HSPG2P98160 AC008267.1-201ENST00000474858 1069 ntBASIC10.11□□□□□ -0.79
HSPG2P98160 FAM86LP-201ENST00000478302 853 ntBASIC10.11□□□□□ -0.79
HSPG2P98160 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC10.11□□□□□ -0.79
HSPG2P98160 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC10.11□□□□□ -0.79
HSPG2P98160 AC138951.2-201ENST00000623455 1161 ntBASIC10.11□□□□□ -0.79
HSPG2P98160 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC10.11□□□□□ -0.79
HSPG2P98160 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC10.11□□□□□ -0.79
HSPG2P98160 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC10.11□□□□□ -0.79
HSPG2P98160 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC10.11□□□□□ -0.79
HSPG2P98160 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
HSPG2P98160 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
HSPG2P98160 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC10.11□□□□□ -0.79
HSPG2P98160 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC10.11□□□□□ -0.79
HSPG2P98160 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
HSPG2P98160 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
HSPG2P98160 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC10.11□□□□□ -0.79
HSPG2P98160 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC10.11□□□□□ -0.79
HSPG2P98160 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC10.11□□□□□ -0.79
HSPG2P98160 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC10.11□□□□□ -0.79
HSPG2P98160 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC10.11□□□□□ -0.79
HSPG2P98160 AF254983.2-201ENST00000612331 135 ntBASIC10.11□□□□□ -0.79
HSPG2P98160 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC10.11□□□□□ -0.79
HSPG2P98160 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC10.11□□□□□ -0.79
HSPG2P98160 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC10.11□□□□□ -0.79
HSPG2P98160 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
HSPG2P98160 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
HSPG2P98160 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC10.1□□□□□ -0.79
HSPG2P98160 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC10.1□□□□□ -0.79
HSPG2P98160 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC10.1□□□□□ -0.79
HSPG2P98160 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC10.1□□□□□ -0.79
HSPG2P98160 AC006001.1-201ENST00000325130 474 ntBASIC10.1□□□□□ -0.79
HSPG2P98160 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC10.1□□□□□ -0.79
HSPG2P98160 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
HSPG2P98160 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC10.1□□□□□ -0.79
HSPG2P98160 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC10.1□□□□□ -0.79
HSPG2P98160 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC10.1□□□□□ -0.79
HSPG2P98160 AC079316.1-201ENST00000548397 411 ntBASIC10.1□□□□□ -0.79
HSPG2P98160 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC10.1□□□□□ -0.79
HSPG2P98160 KLK3-211ENST00000597483 810 ntTSL 2 BASIC10.1□□□□□ -0.79
HSPG2P98160 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC10.1□□□□□ -0.79
HSPG2P98160 Z97205.2-201ENST00000564697 1639 ntBASIC10.1□□□□□ -0.79
HSPG2P98160 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC10.1□□□□□ -0.79
HSPG2P98160 KRT18P55-202ENST00000578578 1546 ntBASIC10.1□□□□□ -0.79
HSPG2P98160 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC10.1□□□□□ -0.79
HSPG2P98160 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC10.1□□□□□ -0.79
HSPG2P98160 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC10.1□□□□□ -0.79
HSPG2P98160 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC10.1□□□□□ -0.79
HSPG2P98160 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC10.1□□□□□ -0.79
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms