Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
RAE1P78406 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
RAE1P78406 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RAE1P78406 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RAE1P78406 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RAE1P78406 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
RAE1P78406 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
RAE1P78406 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RAE1P78406 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
RAE1P78406 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
RAE1P78406 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
RAE1P78406 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RAE1P78406 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RAE1P78406 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RAE1P78406 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC15.81■□□□□ 0.12
RAE1P78406 HCG4B-203ENST00000450128 991 ntBASIC15.81■□□□□ 0.12
RAE1P78406 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
RAE1P78406 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC15.81■□□□□ 0.12
RAE1P78406 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC15.81■□□□□ 0.12
RAE1P78406 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
RAE1P78406 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC15.81■□□□□ 0.12
RAE1P78406 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC15.81■□□□□ 0.12
RAE1P78406 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC15.81■□□□□ 0.12
RAE1P78406 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
RAE1P78406 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
RAE1P78406 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
RAE1P78406 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC15.81■□□□□ 0.12
RAE1P78406 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC15.81■□□□□ 0.12
RAE1P78406 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
RAE1P78406 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC15.81■□□□□ 0.12
RAE1P78406 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RAE1P78406 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RAE1P78406 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
RAE1P78406 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC15.81■□□□□ 0.12
RAE1P78406 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
RAE1P78406 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RAE1P78406 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC15.8■□□□□ 0.12
RAE1P78406 PKD1P1-201ENST00000458669 6805 ntBASIC15.8■□□□□ 0.12
RAE1P78406 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC15.8■□□□□ 0.12
RAE1P78406 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
RAE1P78406 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RAE1P78406 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RAE1P78406 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RAE1P78406 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RAE1P78406 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC15.8■□□□□ 0.12
RAE1P78406 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
RAE1P78406 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
RAE1P78406 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RAE1P78406 RNU1-129P-201ENST00000384064 167 ntBASIC15.8■□□□□ 0.12
RAE1P78406 ATP6V0CP3-201ENST00000417255 467 ntBASIC15.8■□□□□ 0.12
RAE1P78406 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
RAE1P78406 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
RAE1P78406 AL513480.1-201ENST00000451731 511 ntBASIC15.8■□□□□ 0.12
RAE1P78406 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.8■□□□□ 0.12
RAE1P78406 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
RAE1P78406 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
RAE1P78406 CD63-204ENST00000546939 779 ntTSL 3 BASIC15.8■□□□□ 0.12
RAE1P78406 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
RAE1P78406 TCAP-202ENST00000578283 583 ntTSL 5 BASIC15.8■□□□□ 0.12
RAE1P78406 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RAE1P78406 U1.21-201ENST00000580816 167 ntBASIC15.8■□□□□ 0.12
RAE1P78406 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
RAE1P78406 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC15.8■□□□□ 0.12
RAE1P78406 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC15.8■□□□□ 0.12
RAE1P78406 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RAE1P78406 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC15.8■□□□□ 0.12
RAE1P78406 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
RAE1P78406 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RAE1P78406 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC15.8■□□□□ 0.12
RAE1P78406 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RAE1P78406 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC15.8■□□□□ 0.12
RAE1P78406 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
RAE1P78406 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
RAE1P78406 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RAE1P78406 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RAE1P78406 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RAE1P78406 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
RAE1P78406 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RAE1P78406 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RAE1P78406 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RAE1P78406 AGK-211ENST00000629555 2765 ntTSL 5 BASIC15.8■□□□□ 0.12
RAE1P78406 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC15.8■□□□□ 0.12
RAE1P78406 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
RAE1P78406 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
RAE1P78406 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
RAE1P78406 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RAE1P78406 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RAE1P78406 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RAE1P78406 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RAE1P78406 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC15.79■□□□□ 0.12
RAE1P78406 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RAE1P78406 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RAE1P78406 AC006449.6-201ENST00000612330 2296 ntBASIC15.79■□□□□ 0.12
RAE1P78406 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RAE1P78406 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RAE1P78406 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.79■□□□□ 0.12
RAE1P78406 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RAE1P78406 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC15.79■□□□□ 0.12
RAE1P78406 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
RAE1P78406 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 260 ms