Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC22.81■■□□□ 1.24
MSH6P52701 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
MSH6P52701 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
MSH6P52701 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC22.8■■□□□ 1.24
MSH6P52701 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC22.8■■□□□ 1.24
MSH6P52701 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
MSH6P52701 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC22.8■■□□□ 1.24
MSH6P52701 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
MSH6P52701 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC22.8■■□□□ 1.24
MSH6P52701 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC22.8■■□□□ 1.24
MSH6P52701 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC22.8■■□□□ 1.24
MSH6P52701 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC22.8■■□□□ 1.24
MSH6P52701 GPAA1P2-201ENST00000417923 928 ntBASIC22.8■■□□□ 1.24
MSH6P52701 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC22.8■■□□□ 1.24
MSH6P52701 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
MSH6P52701 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC22.8■■□□□ 1.24
MSH6P52701 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC22.8■■□□□ 1.24
MSH6P52701 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC22.8■■□□□ 1.24
MSH6P52701 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
MSH6P52701 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC22.8■■□□□ 1.24
MSH6P52701 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC22.8■■□□□ 1.24
MSH6P52701 AL022328.1-201ENST00000610050 478 ntBASIC22.8■■□□□ 1.24
MSH6P52701 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC22.8■■□□□ 1.24
MSH6P52701 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
MSH6P52701 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
MSH6P52701 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
MSH6P52701 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC22.8■■□□□ 1.24
MSH6P52701 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC22.8■■□□□ 1.24
MSH6P52701 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC22.8■■□□□ 1.24
MSH6P52701 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC22.79■■□□□ 1.24
MSH6P52701 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC22.79■■□□□ 1.24
MSH6P52701 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
MSH6P52701 FRMD8P1-201ENST00000440433 1524 ntBASIC22.79■■□□□ 1.24
MSH6P52701 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC22.79■■□□□ 1.24
MSH6P52701 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
MSH6P52701 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
MSH6P52701 AC005229.1-201ENST00000392885 409 ntBASIC22.79■■□□□ 1.24
MSH6P52701 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC22.79■■□□□ 1.24
MSH6P52701 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC22.79■■□□□ 1.24
MSH6P52701 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC22.79■■□□□ 1.24
MSH6P52701 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC22.79■■□□□ 1.24
MSH6P52701 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC22.79■■□□□ 1.24
MSH6P52701 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC22.79■■□□□ 1.24
MSH6P52701 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC22.79■■□□□ 1.24
MSH6P52701 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC22.79■■□□□ 1.24
MSH6P52701 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
MSH6P52701 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC22.79■■□□□ 1.24
MSH6P52701 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
MSH6P52701 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
MSH6P52701 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC22.79■■□□□ 1.24
MSH6P52701 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC22.79■■□□□ 1.24
MSH6P52701 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC22.79■■□□□ 1.24
MSH6P52701 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
MSH6P52701 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC22.79■■□□□ 1.24
MSH6P52701 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC22.78■■□□□ 1.24
MSH6P52701 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC22.78■■□□□ 1.24
MSH6P52701 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC22.78■■□□□ 1.24
MSH6P52701 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
MSH6P52701 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC22.78■■□□□ 1.24
MSH6P52701 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC22.78■■□□□ 1.24
MSH6P52701 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC22.78■■□□□ 1.24
MSH6P52701 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
MSH6P52701 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC22.78■■□□□ 1.24
MSH6P52701 AL162726.2-201ENST00000438986 1017 ntBASIC22.78■■□□□ 1.24
MSH6P52701 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
MSH6P52701 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC22.78■■□□□ 1.24
MSH6P52701 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC22.78■■□□□ 1.24
MSH6P52701 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC22.78■■□□□ 1.24
MSH6P52701 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC22.78■■□□□ 1.24
MSH6P52701 AC061975.2-201ENST00000581722 295 ntBASIC22.78■■□□□ 1.24
MSH6P52701 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC22.78■■□□□ 1.24
MSH6P52701 RPS15-212ENST00000593052 629 ntTSL 2 BASIC22.78■■□□□ 1.24
MSH6P52701 DEK-201ENST00000244776 1441 ntTSL 2 BASIC22.78■■□□□ 1.24
MSH6P52701 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC22.78■■□□□ 1.24
MSH6P52701 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC22.78■■□□□ 1.24
MSH6P52701 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
MSH6P52701 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC22.78■■□□□ 1.24
MSH6P52701 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC22.78■■□□□ 1.24
MSH6P52701 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC22.78■■□□□ 1.24
MSH6P52701 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
MSH6P52701 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC22.78■■□□□ 1.24
MSH6P52701 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
MSH6P52701 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC22.78■■□□□ 1.24
MSH6P52701 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC22.78■■□□□ 1.24
MSH6P52701 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC22.78■■□□□ 1.24
MSH6P52701 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC22.78■■□□□ 1.24
MSH6P52701 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
MSH6P52701 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC22.77■■□□□ 1.24
MSH6P52701 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
MSH6P52701 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
MSH6P52701 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC22.77■■□□□ 1.24
MSH6P52701 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC22.77■■□□□ 1.24
MSH6P52701 ABBA01031660.1-201ENST00000635219 756 ntBASIC22.77■■□□□ 1.24
MSH6P52701 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC22.77■■□□□ 1.24
MSH6P52701 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC22.77■■□□□ 1.24
MSH6P52701 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
MSH6P52701 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC22.77■■□□□ 1.24
MSH6P52701 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC22.77■■□□□ 1.24
MSH6P52701 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
MSH6P52701 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC22.77■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms