Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC16.63■□□□□ 0.25
MSH3P20585 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.63■□□□□ 0.25
MSH3P20585 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.63■□□□□ 0.25
MSH3P20585 AC040169.1-201ENST00000565382 521 ntBASIC16.63■□□□□ 0.25
MSH3P20585 AL031432.2-201ENST00000566714 459 ntBASIC16.63■□□□□ 0.25
MSH3P20585 AL928711.1-201ENST00000570165 459 ntBASIC16.63■□□□□ 0.25
MSH3P20585 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSH3P20585 CYP2A7P1-201ENST00000595391 815 ntBASIC16.63■□□□□ 0.25
MSH3P20585 AL671883.3-201ENST00000603274 991 ntBASIC16.63■□□□□ 0.25
MSH3P20585 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
MSH3P20585 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
MSH3P20585 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC16.63■□□□□ 0.25
MSH3P20585 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.63■□□□□ 0.25
MSH3P20585 FLJ38576-201ENST00000623820 2459 ntBASIC16.63■□□□□ 0.25
MSH3P20585 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSH3P20585 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
MSH3P20585 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
MSH3P20585 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
MSH3P20585 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSH3P20585 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.63■□□□□ 0.25
MSH3P20585 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
MSH3P20585 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSH3P20585 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSH3P20585 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.63■□□□□ 0.25
MSH3P20585 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH3P20585 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH3P20585 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
MSH3P20585 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH3P20585 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH3P20585 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
MSH3P20585 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH3P20585 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.62■□□□□ 0.25
MSH3P20585 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH3P20585 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH3P20585 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH3P20585 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.62■□□□□ 0.25
MSH3P20585 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.62■□□□□ 0.25
MSH3P20585 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
MSH3P20585 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
MSH3P20585 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH3P20585 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH3P20585 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.62■□□□□ 0.25
MSH3P20585 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH3P20585 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
MSH3P20585 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH3P20585 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH3P20585 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
MSH3P20585 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
MSH3P20585 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH3P20585 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
MSH3P20585 FABP5-202ENST00000396359 986 ntTSL 5 BASIC16.62■□□□□ 0.25
MSH3P20585 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC16.62■□□□□ 0.25
MSH3P20585 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
MSH3P20585 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
MSH3P20585 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC16.62■□□□□ 0.25
MSH3P20585 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.62■□□□□ 0.25
MSH3P20585 NMU-202ENST00000505262 693 ntTSL 3 BASIC16.62■□□□□ 0.25
MSH3P20585 KRT19P2-202ENST00000557173 1012 ntBASIC16.62■□□□□ 0.25
MSH3P20585 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC16.62■□□□□ 0.25
MSH3P20585 MIR4492-201ENST00000581627 80 ntBASIC16.62■□□□□ 0.25
MSH3P20585 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.62■□□□□ 0.25
MSH3P20585 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
MSH3P20585 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
MSH3P20585 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
MSH3P20585 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
MSH3P20585 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.62■□□□□ 0.25
MSH3P20585 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
MSH3P20585 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH3P20585 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
MSH3P20585 PCDHA14-201ENST00000506751 2298 ntBASIC16.62■□□□□ 0.25
MSH3P20585 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
MSH3P20585 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH3P20585 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH3P20585 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
MSH3P20585 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
MSH3P20585 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH3P20585 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
MSH3P20585 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
MSH3P20585 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSH3P20585 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.61■□□□□ 0.25
MSH3P20585 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
MSH3P20585 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
MSH3P20585 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSH3P20585 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSH3P20585 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
MSH3P20585 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
MSH3P20585 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSH3P20585 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSH3P20585 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.61■□□□□ 0.25
MSH3P20585 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSH3P20585 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
MSH3P20585 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.61■□□□□ 0.25
MSH3P20585 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
MSH3P20585 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSH3P20585 AC023274.1-201ENST00000418278 595 ntBASIC16.61■□□□□ 0.25
MSH3P20585 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC16.61■□□□□ 0.25
MSH3P20585 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
MSH3P20585 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC16.61■□□□□ 0.25
MSH3P20585 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC16.61■□□□□ 0.25
MSH3P20585 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms