Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL2A1P02458 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC19.22■□□□□ 0.67
COL2A1P02458 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC19.22■□□□□ 0.67
COL2A1P02458 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC19.22■□□□□ 0.67
COL2A1P02458 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL2A1P02458 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL2A1P02458 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL2A1P02458 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC19.22■□□□□ 0.67
COL2A1P02458 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL2A1P02458 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL2A1P02458 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
COL2A1P02458 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL2A1P02458 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL2A1P02458 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL2A1P02458 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
COL2A1P02458 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC19.22■□□□□ 0.67
COL2A1P02458 AC022494.1-201ENST00000466044 728 ntBASIC19.22■□□□□ 0.67
COL2A1P02458 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC19.22■□□□□ 0.67
COL2A1P02458 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
COL2A1P02458 AC055876.2-201ENST00000531834 546 ntBASIC19.22■□□□□ 0.67
COL2A1P02458 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL2A1P02458 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC19.22■□□□□ 0.67
COL2A1P02458 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC19.22■□□□□ 0.67
COL2A1P02458 WASH4P-201ENST00000564273 1246 ntBASIC19.22■□□□□ 0.67
COL2A1P02458 AC092337.1-201ENST00000568699 1129 ntBASIC19.22■□□□□ 0.67
COL2A1P02458 AC099568.2-201ENST00000609194 695 ntBASIC19.22■□□□□ 0.67
COL2A1P02458 TEX48-202ENST00000612244 662 ntTSL 3 BASIC19.22■□□□□ 0.67
COL2A1P02458 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL2A1P02458 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL2A1P02458 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL2A1P02458 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL2A1P02458 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC19.21■□□□□ 0.67
COL2A1P02458 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC19.21■□□□□ 0.67
COL2A1P02458 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL2A1P02458 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
COL2A1P02458 SLC7A15P-201ENST00000424028 1363 ntBASIC19.21■□□□□ 0.67
COL2A1P02458 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL2A1P02458 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC19.21■□□□□ 0.67
COL2A1P02458 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC19.21■□□□□ 0.67
COL2A1P02458 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL2A1P02458 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC19.21■□□□□ 0.67
COL2A1P02458 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL2A1P02458 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC19.21■□□□□ 0.67
COL2A1P02458 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL2A1P02458 OR8S1-201ENST00000310194 1080 ntBASIC19.21■□□□□ 0.67
COL2A1P02458 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL2A1P02458 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC19.21■□□□□ 0.67
COL2A1P02458 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC19.21■□□□□ 0.67
COL2A1P02458 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC19.21■□□□□ 0.67
COL2A1P02458 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC19.21■□□□□ 0.67
COL2A1P02458 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL2A1P02458 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC19.21■□□□□ 0.67
COL2A1P02458 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL2A1P02458 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC19.2■□□□□ 0.66
COL2A1P02458 AC105020.1-201ENST00000435356 2205 ntBASIC19.2■□□□□ 0.66
COL2A1P02458 U82695.1-201ENST00000635752 1889 ntBASIC19.2■□□□□ 0.66
COL2A1P02458 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC19.2■□□□□ 0.66
COL2A1P02458 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL2A1P02458 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL2A1P02458 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL2A1P02458 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL2A1P02458 AC018470.1-201ENST00000624790 3129 ntBASIC19.2■□□□□ 0.66
COL2A1P02458 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL2A1P02458 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC19.2■□□□□ 0.66
COL2A1P02458 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL2A1P02458 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL2A1P02458 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL2A1P02458 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL2A1P02458 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL2A1P02458 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
COL2A1P02458 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
COL2A1P02458 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC19.2■□□□□ 0.66
COL2A1P02458 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC19.2■□□□□ 0.66
COL2A1P02458 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC19.2■□□□□ 0.66
COL2A1P02458 PTK7-212ENST00000476760 902 ntTSL 2 BASIC19.2■□□□□ 0.66
COL2A1P02458 SDHAP3-202ENST00000515467 728 ntBASIC19.2■□□□□ 0.66
COL2A1P02458 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC19.2■□□□□ 0.66
COL2A1P02458 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC19.2■□□□□ 0.66
COL2A1P02458 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL2A1P02458 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL2A1P02458 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC19.2■□□□□ 0.66
COL2A1P02458 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC19.2■□□□□ 0.66
COL2A1P02458 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC19.2■□□□□ 0.66
COL2A1P02458 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL2A1P02458 AC078925.2-201ENST00000624013 1973 ntBASIC19.2■□□□□ 0.66
COL2A1P02458 AC005915.1-201ENST00000624912 2018 ntBASIC19.2■□□□□ 0.66
COL2A1P02458 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC19.19■□□□□ 0.66
COL2A1P02458 CYP4F24P-201ENST00000586049 1580 ntBASIC19.19■□□□□ 0.66
COL2A1P02458 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
COL2A1P02458 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL2A1P02458 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL2A1P02458 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL2A1P02458 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC19.19■□□□□ 0.66
COL2A1P02458 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL2A1P02458 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL2A1P02458 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC19.19■□□□□ 0.66
COL2A1P02458 DOC2GP-202ENST00000514950 1163 ntBASIC19.19■□□□□ 0.66
COL2A1P02458 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC19.19■□□□□ 0.66
COL2A1P02458 SRD5A3P1-201ENST00000603021 949 ntBASIC19.19■□□□□ 0.66
COL2A1P02458 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 6.7 ms