Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC16.21■□□□□ 0.19
LDLRP01130 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LDLRP01130 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDLRP01130 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.21■□□□□ 0.19
LDLRP01130 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.21■□□□□ 0.19
LDLRP01130 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDLRP01130 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
LDLRP01130 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDLRP01130 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDLRP01130 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.19
LDLRP01130 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LDLRP01130 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.18
LDLRP01130 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.21■□□□□ 0.18
LDLRP01130 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDLRP01130 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LDLRP01130 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
LDLRP01130 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDLRP01130 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDLRP01130 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.2■□□□□ 0.18
LDLRP01130 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDLRP01130 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDLRP01130 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LDLRP01130 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.2■□□□□ 0.18
LDLRP01130 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
LDLRP01130 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDLRP01130 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LDLRP01130 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDLRP01130 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
LDLRP01130 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDLRP01130 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LDLRP01130 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDLRP01130 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.2■□□□□ 0.18
LDLRP01130 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDLRP01130 RCN1P2-201ENST00000398357 915 ntBASIC16.2■□□□□ 0.18
LDLRP01130 AC112698.1-201ENST00000510299 916 ntBASIC16.2■□□□□ 0.18
LDLRP01130 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC16.2■□□□□ 0.18
LDLRP01130 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.2■□□□□ 0.18
LDLRP01130 AC009154.2-201ENST00000621177 724 ntBASIC16.2■□□□□ 0.18
LDLRP01130 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
LDLRP01130 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.2■□□□□ 0.18
LDLRP01130 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.2■□□□□ 0.18
LDLRP01130 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LDLRP01130 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDLRP01130 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LDLRP01130 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDLRP01130 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDLRP01130 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LDLRP01130 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
LDLRP01130 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
LDLRP01130 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.2■□□□□ 0.18
LDLRP01130 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDLRP01130 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LDLRP01130 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
LDLRP01130 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
LDLRP01130 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.19■□□□□ 0.18
LDLRP01130 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.19■□□□□ 0.18
LDLRP01130 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LDLRP01130 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LDLRP01130 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LDLRP01130 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.19■□□□□ 0.18
LDLRP01130 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LDLRP01130 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LDLRP01130 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LDLRP01130 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
LDLRP01130 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
LDLRP01130 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LDLRP01130 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
LDLRP01130 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
LDLRP01130 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LDLRP01130 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC16.19■□□□□ 0.18
LDLRP01130 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC16.19■□□□□ 0.18
LDLRP01130 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC16.19■□□□□ 0.18
LDLRP01130 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LDLRP01130 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.19■□□□□ 0.18
LDLRP01130 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LDLRP01130 KRT18P3-201ENST00000451602 1288 ntBASIC16.19■□□□□ 0.18
LDLRP01130 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
LDLRP01130 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LDLRP01130 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC16.19■□□□□ 0.18
LDLRP01130 AC040169.1-201ENST00000565382 521 ntBASIC16.19■□□□□ 0.18
LDLRP01130 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16.19■□□□□ 0.18
LDLRP01130 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC16.19■□□□□ 0.18
LDLRP01130 AC134684.3-201ENST00000641758 218 ntBASIC16.19■□□□□ 0.18
LDLRP01130 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
LDLRP01130 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LDLRP01130 AC105917.1-201ENST00000506637 2539 ntBASIC16.19■□□□□ 0.18
LDLRP01130 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
LDLRP01130 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
LDLRP01130 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LDLRP01130 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
LDLRP01130 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LDLRP01130 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
LDLRP01130 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LDLRP01130 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LDLRP01130 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.19■□□□□ 0.18
LDLRP01130 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
LDLRP01130 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.19■□□□□ 0.18
LDLRP01130 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LDLRP01130 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LDLRP01130 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms