Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PRKNO60260 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC15.53■□□□□ 0.08
PRKNO60260 CFL1-202ENST00000524553 860 ntTSL 2 BASIC15.53■□□□□ 0.08
PRKNO60260 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC15.53■□□□□ 0.08
PRKNO60260 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PRKNO60260 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC15.53■□□□□ 0.08
PRKNO60260 U1.21-201ENST00000580816 167 ntBASIC15.53■□□□□ 0.08
PRKNO60260 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC15.53■□□□□ 0.08
PRKNO60260 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC15.53■□□□□ 0.08
PRKNO60260 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PRKNO60260 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC15.53■□□□□ 0.08
PRKNO60260 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PRKNO60260 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
PRKNO60260 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PRKNO60260 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC15.53■□□□□ 0.08
PRKNO60260 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PRKNO60260 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC15.53■□□□□ 0.08
PRKNO60260 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.53■□□□□ 0.08
PRKNO60260 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC15.53■□□□□ 0.08
PRKNO60260 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PRKNO60260 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PRKNO60260 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
PRKNO60260 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC15.53■□□□□ 0.08
PRKNO60260 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
PRKNO60260 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC15.52■□□□□ 0.08
PRKNO60260 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PRKNO60260 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PRKNO60260 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PRKNO60260 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
PRKNO60260 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PRKNO60260 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC15.52■□□□□ 0.08
PRKNO60260 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PRKNO60260 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PRKNO60260 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PRKNO60260 AC005052.1-201ENST00000625181 2492 ntBASIC15.52■□□□□ 0.08
PRKNO60260 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PRKNO60260 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
PRKNO60260 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC15.52■□□□□ 0.08
PRKNO60260 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
PRKNO60260 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.08
PRKNO60260 CROCCP1-201ENST00000426910 5675 ntBASIC15.52■□□□□ 0.08
PRKNO60260 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
PRKNO60260 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PRKNO60260 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC15.52■□□□□ 0.08
PRKNO60260 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC15.52■□□□□ 0.08
PRKNO60260 ADH5P3-201ENST00000433842 1137 ntBASIC15.52■□□□□ 0.08
PRKNO60260 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC15.52■□□□□ 0.08
PRKNO60260 DNAJB3-202ENST00000449667 1266 ntBASIC15.52■□□□□ 0.08
PRKNO60260 MTRF1LP2-201ENST00000506027 1122 ntBASIC15.52■□□□□ 0.08
PRKNO60260 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.52■□□□□ 0.08
PRKNO60260 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.08
PRKNO60260 AC112191.1-201ENST00000523689 701 ntBASIC15.52■□□□□ 0.08
PRKNO60260 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC15.52■□□□□ 0.08
PRKNO60260 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
PRKNO60260 IGHV3OR16-6-201ENST00000568775 360 ntBASIC15.52■□□□□ 0.08
PRKNO60260 AL009183.1-201ENST00000603760 355 ntBASIC15.52■□□□□ 0.08
PRKNO60260 AL031055.1-201ENST00000606362 631 ntBASIC15.52■□□□□ 0.08
PRKNO60260 AL596442.2-201ENST00000610240 980 ntBASIC15.52■□□□□ 0.08
PRKNO60260 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PRKNO60260 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
PRKNO60260 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
PRKNO60260 PCDHA14-201ENST00000506751 2298 ntBASIC15.52■□□□□ 0.07
PRKNO60260 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
PRKNO60260 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PRKNO60260 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
PRKNO60260 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
PRKNO60260 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
PRKNO60260 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
PRKNO60260 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PRKNO60260 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.07
PRKNO60260 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
PRKNO60260 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PRKNO60260 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC15.52■□□□□ 0.07
PRKNO60260 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
PRKNO60260 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.51■□□□□ 0.07
PRKNO60260 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PRKNO60260 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PRKNO60260 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
PRKNO60260 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC15.51■□□□□ 0.07
PRKNO60260 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC15.51■□□□□ 0.07
PRKNO60260 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PRKNO60260 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PRKNO60260 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC15.51■□□□□ 0.07
PRKNO60260 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PRKNO60260 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PRKNO60260 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PRKNO60260 AC002056.1-201ENST00000395613 760 ntBASIC15.51■□□□□ 0.07
PRKNO60260 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC15.51■□□□□ 0.07
PRKNO60260 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.51■□□□□ 0.07
PRKNO60260 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PRKNO60260 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC15.51■□□□□ 0.07
PRKNO60260 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
PRKNO60260 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
PRKNO60260 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC15.51■□□□□ 0.07
PRKNO60260 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
PRKNO60260 AP001350.2-201ENST00000625104 1094 ntBASIC15.51■□□□□ 0.07
PRKNO60260 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
PRKNO60260 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PRKNO60260 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PRKNO60260 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms