Protein–RNA interactions for Protein: P61009

SPCS3, Signal peptidase complex subunit 3, humanhuman

Predictions only

Length 180 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPCS3P61009 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SPCS3P61009 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SPCS3P61009 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SPCS3P61009 PREB-202ENST00000406567 1910 ntTSL 5 BASIC19.26■□□□□ 0.67
SPCS3P61009 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SPCS3P61009 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
SPCS3P61009 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SPCS3P61009 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
SPCS3P61009 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SPCS3P61009 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC19.26■□□□□ 0.67
SPCS3P61009 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SPCS3P61009 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SPCS3P61009 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SPCS3P61009 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
SPCS3P61009 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC19.25■□□□□ 0.67
SPCS3P61009 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SPCS3P61009 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SPCS3P61009 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SPCS3P61009 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SPCS3P61009 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
SPCS3P61009 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SPCS3P61009 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SPCS3P61009 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SPCS3P61009 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SPCS3P61009 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SPCS3P61009 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SPCS3P61009 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SPCS3P61009 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SPCS3P61009 HES6-205ENST00000409356 528 ntTSL 2 BASIC19.23■□□□□ 0.67
SPCS3P61009 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC19.23■□□□□ 0.67
SPCS3P61009 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SPCS3P61009 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SPCS3P61009 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SPCS3P61009 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SPCS3P61009 HLA-V-202ENST00000446817 847 ntBASIC19.22■□□□□ 0.67
SPCS3P61009 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
SPCS3P61009 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
SPCS3P61009 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC19.22■□□□□ 0.67
SPCS3P61009 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SPCS3P61009 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SPCS3P61009 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC19.22■□□□□ 0.67
SPCS3P61009 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SPCS3P61009 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC19.21■□□□□ 0.67
SPCS3P61009 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SPCS3P61009 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC19.21■□□□□ 0.67
SPCS3P61009 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC19.21■□□□□ 0.67
SPCS3P61009 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SPCS3P61009 AP003733.4-201ENST00000623785 1697 ntBASIC19.2■□□□□ 0.66
SPCS3P61009 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SPCS3P61009 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC19.2■□□□□ 0.66
SPCS3P61009 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SPCS3P61009 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SPCS3P61009 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SPCS3P61009 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SPCS3P61009 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SPCS3P61009 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SPCS3P61009 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SPCS3P61009 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
SPCS3P61009 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC19.19■□□□□ 0.66
SPCS3P61009 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SPCS3P61009 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SPCS3P61009 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC19.19■□□□□ 0.66
SPCS3P61009 AC126177.7-201ENST00000547904 679 ntBASIC19.19■□□□□ 0.66
SPCS3P61009 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
SPCS3P61009 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SPCS3P61009 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SPCS3P61009 AC097639.1-201ENST00000565519 1891 ntBASIC19.18■□□□□ 0.66
SPCS3P61009 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC19.18■□□□□ 0.66
SPCS3P61009 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SPCS3P61009 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC19.18■□□□□ 0.66
SPCS3P61009 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SPCS3P61009 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
SPCS3P61009 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
SPCS3P61009 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SPCS3P61009 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
SPCS3P61009 EED-207ENST00000528180 1745 ntTSL 5 BASIC19.17■□□□□ 0.66
SPCS3P61009 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SPCS3P61009 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SPCS3P61009 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SPCS3P61009 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SPCS3P61009 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
SPCS3P61009 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC19.17■□□□□ 0.66
SPCS3P61009 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SPCS3P61009 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
SPCS3P61009 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SPCS3P61009 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.17■□□□□ 0.66
SPCS3P61009 AC133561.1-201ENST00000568600 2415 ntBASIC19.16■□□□□ 0.66
SPCS3P61009 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SPCS3P61009 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SPCS3P61009 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SPCS3P61009 AGPS-202ENST00000409888 815 ntTSL 4 BASIC19.16■□□□□ 0.66
SPCS3P61009 RPS2P35-201ENST00000443417 897 ntBASIC19.16■□□□□ 0.66
SPCS3P61009 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC19.16■□□□□ 0.66
SPCS3P61009 MED25-210ENST00000612854 801 ntTSL 5 BASIC19.16■□□□□ 0.66
SPCS3P61009 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SPCS3P61009 MED25-214ENST00000622402 642 ntTSL 5 BASIC19.16■□□□□ 0.66
SPCS3P61009 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
SPCS3P61009 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC19.16■□□□□ 0.66
SPCS3P61009 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
SPCS3P61009 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms