Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.97■□□□□ 0.47
SSX2IPQ9Y2D8 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SSX2IPQ9Y2D8 TOP3BP1-201ENST00000420768 1380 ntBASIC17.97■□□□□ 0.47
SSX2IPQ9Y2D8 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SSX2IPQ9Y2D8 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
SSX2IPQ9Y2D8 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SSX2IPQ9Y2D8 CALY-203ENST00000368558 825 ntTSL 5 BASIC17.97■□□□□ 0.47
SSX2IPQ9Y2D8 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SSX2IPQ9Y2D8 PMS2P4-201ENST00000412466 1052 ntBASIC17.97■□□□□ 0.47
SSX2IPQ9Y2D8 SPDYE7P-202ENST00000420373 878 ntBASIC17.97■□□□□ 0.47
SSX2IPQ9Y2D8 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SSX2IPQ9Y2D8 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC17.97■□□□□ 0.47
SSX2IPQ9Y2D8 SPCS2P4-201ENST00000436160 681 ntBASIC17.97■□□□□ 0.47
SSX2IPQ9Y2D8 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC17.97■□□□□ 0.47
SSX2IPQ9Y2D8 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SSX2IPQ9Y2D8 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC17.97■□□□□ 0.47
SSX2IPQ9Y2D8 AJ011932.1-201ENST00000621707 465 ntBASIC17.97■□□□□ 0.47
SSX2IPQ9Y2D8 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.97■□□□□ 0.47
SSX2IPQ9Y2D8 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SSX2IPQ9Y2D8 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.97■□□□□ 0.47
SSX2IPQ9Y2D8 AC011270.2-201ENST00000624293 2550 ntBASIC17.97■□□□□ 0.47
SSX2IPQ9Y2D8 AC012317.2-201ENST00000623305 2251 ntBASIC17.97■□□□□ 0.47
SSX2IPQ9Y2D8 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SSX2IPQ9Y2D8 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SSX2IPQ9Y2D8 WASH6P-202ENST00000359512 1437 ntBASIC17.97■□□□□ 0.47
SSX2IPQ9Y2D8 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
SSX2IPQ9Y2D8 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SSX2IPQ9Y2D8 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC17.97■□□□□ 0.47
SSX2IPQ9Y2D8 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SSX2IPQ9Y2D8 TUBB3P1-201ENST00000405796 1332 ntBASIC17.97■□□□□ 0.47
SSX2IPQ9Y2D8 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
SSX2IPQ9Y2D8 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
SSX2IPQ9Y2D8 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SSX2IPQ9Y2D8 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SSX2IPQ9Y2D8 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
SSX2IPQ9Y2D8 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SSX2IPQ9Y2D8 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SSX2IPQ9Y2D8 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SSX2IPQ9Y2D8 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SSX2IPQ9Y2D8 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SSX2IPQ9Y2D8 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SSX2IPQ9Y2D8 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC17.96■□□□□ 0.47
SSX2IPQ9Y2D8 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SSX2IPQ9Y2D8 VMA21-202ENST00000370361 693 ntTSL 5 BASIC17.96■□□□□ 0.47
SSX2IPQ9Y2D8 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC17.96■□□□□ 0.47
SSX2IPQ9Y2D8 PTMS-202ENST00000389462 773 ntTSL 2 BASIC17.96■□□□□ 0.47
SSX2IPQ9Y2D8 RBPMS2P1-201ENST00000437762 623 ntBASIC17.96■□□□□ 0.47
SSX2IPQ9Y2D8 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SSX2IPQ9Y2D8 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
SSX2IPQ9Y2D8 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC17.96■□□□□ 0.47
SSX2IPQ9Y2D8 AQP6-203ENST00000551733 849 ntTSL 3 BASIC17.96■□□□□ 0.47
SSX2IPQ9Y2D8 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SSX2IPQ9Y2D8 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC17.96■□□□□ 0.47
SSX2IPQ9Y2D8 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SSX2IPQ9Y2D8 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SSX2IPQ9Y2D8 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.47
SSX2IPQ9Y2D8 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SSX2IPQ9Y2D8 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
SSX2IPQ9Y2D8 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
SSX2IPQ9Y2D8 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.96■□□□□ 0.47
SSX2IPQ9Y2D8 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC17.96■□□□□ 0.46
SSX2IPQ9Y2D8 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
SSX2IPQ9Y2D8 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.96■□□□□ 0.46
SSX2IPQ9Y2D8 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 UXT-AS1-201ENST00000590504 1525 ntBASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 BASP1P1-201ENST00000430708 665 ntBASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 COX20P2-201ENST00000452636 358 ntBASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 AC087641.1-201ENST00000557561 1021 ntBASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 AC051619.7-201ENST00000568314 623 ntBASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 INO80C-206ENST00000586489 594 ntTSL 3 BASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 WT1-AS_2.1-201ENST00000613208 137 ntBASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 AC084121.4-201ENST00000641598 221 ntBASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 AF228730.8-201ENST00000642140 221 ntBASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.95■□□□□ 0.46
SSX2IPQ9Y2D8 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms