Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 AL391005.1-201ENST00000623953 2435 ntBASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM56Q9BRZ2 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM56Q9BRZ2 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM56Q9BRZ2 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM56Q9BRZ2 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM56Q9BRZ2 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC17.1■□□□□ 0.33
TRIM56Q9BRZ2 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM56Q9BRZ2 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM56Q9BRZ2 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM56Q9BRZ2 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM56Q9BRZ2 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM56Q9BRZ2 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.1■□□□□ 0.33
TRIM56Q9BRZ2 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM56Q9BRZ2 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM56Q9BRZ2 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM56Q9BRZ2 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM56Q9BRZ2 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM56Q9BRZ2 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC17.1■□□□□ 0.33
TRIM56Q9BRZ2 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC17.1■□□□□ 0.33
TRIM56Q9BRZ2 KRT18P31-201ENST00000506277 1292 ntBASIC17.1■□□□□ 0.33
TRIM56Q9BRZ2 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM56Q9BRZ2 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM56Q9BRZ2 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC17.1■□□□□ 0.33
TRIM56Q9BRZ2 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
TRIM56Q9BRZ2 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM56Q9BRZ2 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC17.1■□□□□ 0.33
TRIM56Q9BRZ2 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM56Q9BRZ2 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM56Q9BRZ2 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM56Q9BRZ2 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.1■□□□□ 0.33
TRIM56Q9BRZ2 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
TRIM56Q9BRZ2 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM56Q9BRZ2 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 AKR1C7P-201ENST00000305623 895 ntBASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 AC026396.1-201ENST00000419388 421 ntBASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 MIR3652-201ENST00000579335 131 ntBASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 TERC-201ENST00000602385 541 ntBASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 AL022326.1-202ENST00000641533 845 ntBASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 AL356309.3-201ENST00000624132 1934 ntBASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 AC026691.1-201ENST00000602502 2017 ntBASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC17.09■□□□□ 0.33
TRIM56Q9BRZ2 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC17.08■□□□□ 0.33
TRIM56Q9BRZ2 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRIM56Q9BRZ2 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRIM56Q9BRZ2 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRIM56Q9BRZ2 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
TRIM56Q9BRZ2 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRIM56Q9BRZ2 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRIM56Q9BRZ2 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRIM56Q9BRZ2 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
TRIM56Q9BRZ2 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC17.08■□□□□ 0.33
TRIM56Q9BRZ2 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms