Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.19■□□□□ 0.34
CDX2Q99626 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC17.19■□□□□ 0.34
CDX2Q99626 HARS-202ENST00000415192 1401 ntTSL 2 BASIC17.19■□□□□ 0.34
CDX2Q99626 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CDX2Q99626 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX2Q99626 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX2Q99626 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX2Q99626 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX2Q99626 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX2Q99626 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX2Q99626 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDX2Q99626 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDX2Q99626 PC-204ENST00000524491 1714 ntTSL 2 BASIC17.18■□□□□ 0.34
CDX2Q99626 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
CDX2Q99626 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDX2Q99626 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDX2Q99626 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDX2Q99626 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDX2Q99626 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDX2Q99626 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
CDX2Q99626 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDX2Q99626 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDX2Q99626 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC17.18■□□□□ 0.34
CDX2Q99626 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC17.18■□□□□ 0.34
CDX2Q99626 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC17.18■□□□□ 0.34
CDX2Q99626 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDX2Q99626 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDX2Q99626 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDX2Q99626 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDX2Q99626 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDX2Q99626 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
CDX2Q99626 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDX2Q99626 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDX2Q99626 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDX2Q99626 BAATP1-201ENST00000412284 1225 ntBASIC17.18■□□□□ 0.34
CDX2Q99626 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC17.18■□□□□ 0.34
CDX2Q99626 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDX2Q99626 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC17.18■□□□□ 0.34
CDX2Q99626 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC17.18■□□□□ 0.34
CDX2Q99626 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC17.18■□□□□ 0.34
CDX2Q99626 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC17.18■□□□□ 0.34
CDX2Q99626 AC023310.1-201ENST00000554836 735 ntBASIC17.18■□□□□ 0.34
CDX2Q99626 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC17.18■□□□□ 0.34
CDX2Q99626 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC17.18■□□□□ 0.34
CDX2Q99626 AC138627.1-207ENST00000641560 1006 ntBASIC17.18■□□□□ 0.34
CDX2Q99626 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CDX2Q99626 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
CDX2Q99626 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
CDX2Q99626 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDX2Q99626 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDX2Q99626 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CDX2Q99626 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.18■□□□□ 0.34
CDX2Q99626 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC17.17■□□□□ 0.34
CDX2Q99626 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CDX2Q99626 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.17■□□□□ 0.34
CDX2Q99626 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDX2Q99626 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
CDX2Q99626 AMT-232ENST00000636199 1546 ntTSL 5 BASIC17.17■□□□□ 0.34
CDX2Q99626 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDX2Q99626 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.17■□□□□ 0.34
CDX2Q99626 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC17.17■□□□□ 0.34
CDX2Q99626 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CDX2Q99626 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC17.17■□□□□ 0.34
CDX2Q99626 PTPA-217ENST00000434095 870 ntTSL 2 BASIC17.17■□□□□ 0.34
CDX2Q99626 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CDX2Q99626 IMP3P2-201ENST00000489760 475 ntBASIC17.17■□□□□ 0.34
CDX2Q99626 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC17.17■□□□□ 0.34
CDX2Q99626 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC17.17■□□□□ 0.34
CDX2Q99626 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC17.17■□□□□ 0.34
CDX2Q99626 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.17■□□□□ 0.34
CDX2Q99626 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CDX2Q99626 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC17.17■□□□□ 0.34
CDX2Q99626 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC17.17■□□□□ 0.34
CDX2Q99626 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC17.17■□□□□ 0.34
CDX2Q99626 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CDX2Q99626 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CDX2Q99626 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC17.17■□□□□ 0.34
CDX2Q99626 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
CDX2Q99626 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.17■□□□□ 0.34
CDX2Q99626 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
CDX2Q99626 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDX2Q99626 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDX2Q99626 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDX2Q99626 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.16■□□□□ 0.34
CDX2Q99626 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.16■□□□□ 0.34
CDX2Q99626 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDX2Q99626 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDX2Q99626 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDX2Q99626 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC17.16■□□□□ 0.34
CDX2Q99626 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
CDX2Q99626 AC114501.1-201ENST00000445949 172 ntBASIC17.16■□□□□ 0.34
CDX2Q99626 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDX2Q99626 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDX2Q99626 PTK7-212ENST00000476760 902 ntTSL 2 BASIC17.16■□□□□ 0.34
CDX2Q99626 PFN2-215ENST00000497148 743 ntTSL 4 BASIC17.16■□□□□ 0.34
CDX2Q99626 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDX2Q99626 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
CDX2Q99626 RPL8-205ENST00000527914 551 ntTSL 3 BASIC17.16■□□□□ 0.34
CDX2Q99626 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC17.16■□□□□ 0.34
CDX2Q99626 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms