Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 RNA5SP416-201ENST00000516838 111 ntBASIC20.17■□□□□ 0.82
VPS53Q5VIR6 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 CAND2-206ENST00000626378 333 ntTSL 5 BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 BCAR1-209ENST00000546196 1340 ntBASIC20.17■□□□□ 0.82
VPS53Q5VIR6 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 GCK-202ENST00000345378 2421 ntTSL 2 BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 AC025580.3-201ENST00000617932 1424 ntBASIC20.17■□□□□ 0.82
VPS53Q5VIR6 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC20.17■□□□□ 0.82
VPS53Q5VIR6 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
VPS53Q5VIR6 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC20.16■□□□□ 0.82
VPS53Q5VIR6 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS53Q5VIR6 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS53Q5VIR6 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
VPS53Q5VIR6 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS53Q5VIR6 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VPS53Q5VIR6 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
VPS53Q5VIR6 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC20.16■□□□□ 0.82
VPS53Q5VIR6 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS53Q5VIR6 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC20.16■□□□□ 0.82
VPS53Q5VIR6 AL513480.1-201ENST00000451731 511 ntBASIC20.16■□□□□ 0.82
VPS53Q5VIR6 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC20.16■□□□□ 0.82
VPS53Q5VIR6 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS53Q5VIR6 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC20.16■□□□□ 0.82
VPS53Q5VIR6 KRT19P2-202ENST00000557173 1012 ntBASIC20.16■□□□□ 0.82
VPS53Q5VIR6 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VPS53Q5VIR6 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC20.16■□□□□ 0.82
VPS53Q5VIR6 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC20.16■□□□□ 0.82
VPS53Q5VIR6 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC20.16■□□□□ 0.82
VPS53Q5VIR6 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC20.16■□□□□ 0.82
VPS53Q5VIR6 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VPS53Q5VIR6 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS53Q5VIR6 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VPS53Q5VIR6 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VPS53Q5VIR6 AL353732.1-201ENST00000569618 1459 ntBASIC20.16■□□□□ 0.82
VPS53Q5VIR6 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS53Q5VIR6 AC006277.1-201ENST00000624348 1610 ntBASIC20.16■□□□□ 0.82
VPS53Q5VIR6 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS53Q5VIR6 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS53Q5VIR6 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VPS53Q5VIR6 STK24-203ENST00000397517 4578 ntTSL 2 BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 RPL28-209ENST00000560055 670 ntTSL 3 BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 AC005412.3-201ENST00000580309 715 ntBASIC20.15■□□□□ 0.82
VPS53Q5VIR6 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 LINC00895-201ENST00000629028 1637 ntBASIC20.15■□□□□ 0.82
VPS53Q5VIR6 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 HLA-A-202ENST00000376806 1854 ntBASIC20.15■□□□□ 0.82
VPS53Q5VIR6 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 TNRC18P3-201ENST00000441896 2691 ntBASIC20.15■□□□□ 0.82
VPS53Q5VIR6 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS53Q5VIR6 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC20.14■□□□□ 0.82
VPS53Q5VIR6 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
VPS53Q5VIR6 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC20.14■□□□□ 0.82
VPS53Q5VIR6 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC20.14■□□□□ 0.82
VPS53Q5VIR6 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
VPS53Q5VIR6 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.82
VPS53Q5VIR6 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC20.14■□□□□ 0.82
VPS53Q5VIR6 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms