Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 FXNP2-201ENST00000411625 547 ntBASIC17.4■□□□□ 0.38
CHD9Q3L8U1 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 FHL2-212ENST00000607522 759 ntTSL 2 BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
CHD9Q3L8U1 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.39■□□□□ 0.38
CHD9Q3L8U1 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.38
CHD9Q3L8U1 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CHD9Q3L8U1 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC17.39■□□□□ 0.38
CHD9Q3L8U1 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
CHD9Q3L8U1 FAM21FP-201ENST00000426241 1131 ntBASIC17.39■□□□□ 0.37
CHD9Q3L8U1 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC17.39■□□□□ 0.37
CHD9Q3L8U1 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC17.39■□□□□ 0.37
CHD9Q3L8U1 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC17.39■□□□□ 0.37
CHD9Q3L8U1 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
CHD9Q3L8U1 PP12613-201ENST00000424958 2230 ntBASIC17.39■□□□□ 0.37
CHD9Q3L8U1 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC17.39■□□□□ 0.37
CHD9Q3L8U1 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHD9Q3L8U1 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHD9Q3L8U1 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
CHD9Q3L8U1 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
CHD9Q3L8U1 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
CHD9Q3L8U1 KRT43P-201ENST00000434019 910 ntBASIC17.39■□□□□ 0.37
CHD9Q3L8U1 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CHD9Q3L8U1 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
CHD9Q3L8U1 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
CHD9Q3L8U1 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CHD9Q3L8U1 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
CHD9Q3L8U1 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 BOLA2P3-201ENST00000404566 256 ntBASIC17.38■□□□□ 0.37
CHD9Q3L8U1 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 MIR6727-201ENST00000620702 65 ntBASIC17.38■□□□□ 0.37
CHD9Q3L8U1 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 LBX2-201ENST00000341396 886 ntTSL 3 BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 AC105129.2-201ENST00000559536 390 ntBASIC17.38■□□□□ 0.37
CHD9Q3L8U1 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 HIST3H2BA-201ENST00000436555 524 ntBASIC17.38■□□□□ 0.37
CHD9Q3L8U1 KRT8P13-201ENST00000463294 1010 ntBASIC17.38■□□□□ 0.37
CHD9Q3L8U1 FAM86HP-204ENST00000513466 959 ntBASIC17.38■□□□□ 0.37
CHD9Q3L8U1 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 DERL2-202ENST00000570848 657 ntTSL 5 BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.38■□□□□ 0.37
CHD9Q3L8U1 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHD9Q3L8U1 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHD9Q3L8U1 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHD9Q3L8U1 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHD9Q3L8U1 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CHD9Q3L8U1 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CHD9Q3L8U1 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CHD9Q3L8U1 AL354751.1-201ENST00000412768 1863 ntBASIC17.37■□□□□ 0.37
CHD9Q3L8U1 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHD9Q3L8U1 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CHD9Q3L8U1 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.37■□□□□ 0.37
CHD9Q3L8U1 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
CHD9Q3L8U1 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHD9Q3L8U1 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CHD9Q3L8U1 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC17.37■□□□□ 0.37
CHD9Q3L8U1 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CHD9Q3L8U1 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CHD9Q3L8U1 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.37■□□□□ 0.37
CHD9Q3L8U1 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.37■□□□□ 0.37
CHD9Q3L8U1 CLK3P2-201ENST00000427566 1453 ntBASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms