Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 AC004890.2-204ENST00000481968 304 ntBASIC16.09■□□□□ 0.17
COL28A1Q2UY09 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 AL049757.1-201ENST00000616842 1596 ntBASIC16.09■□□□□ 0.17
COL28A1Q2UY09 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL28A1Q2UY09 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.08■□□□□ 0.17
COL28A1Q2UY09 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC16.08■□□□□ 0.17
COL28A1Q2UY09 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.08■□□□□ 0.17
COL28A1Q2UY09 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.08■□□□□ 0.17
COL28A1Q2UY09 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
COL28A1Q2UY09 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
COL28A1Q2UY09 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
COL28A1Q2UY09 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC16.08■□□□□ 0.17
COL28A1Q2UY09 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
COL28A1Q2UY09 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL28A1Q2UY09 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL28A1Q2UY09 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL28A1Q2UY09 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.08■□□□□ 0.16
COL28A1Q2UY09 MRPS18AP1-201ENST00000414458 589 ntBASIC16.08■□□□□ 0.16
COL28A1Q2UY09 AC241585.1-201ENST00000433527 519 ntBASIC16.08■□□□□ 0.16
COL28A1Q2UY09 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC16.08■□□□□ 0.16
COL28A1Q2UY09 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC16.08■□□□□ 0.16
COL28A1Q2UY09 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC16.08■□□□□ 0.16
COL28A1Q2UY09 AC092658.1-201ENST00000505836 891 ntBASIC16.08■□□□□ 0.16
COL28A1Q2UY09 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC16.08■□□□□ 0.16
COL28A1Q2UY09 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC16.08■□□□□ 0.16
COL28A1Q2UY09 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC16.08■□□□□ 0.16
COL28A1Q2UY09 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC16.08■□□□□ 0.16
COL28A1Q2UY09 Six3os1_5.1-201ENST00000611000 271 ntBASIC16.08■□□□□ 0.16
COL28A1Q2UY09 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC16.08■□□□□ 0.16
COL28A1Q2UY09 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL28A1Q2UY09 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.08■□□□□ 0.16
COL28A1Q2UY09 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL28A1Q2UY09 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL28A1Q2UY09 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL28A1Q2UY09 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL28A1Q2UY09 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.08■□□□□ 0.16
COL28A1Q2UY09 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL28A1Q2UY09 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
COL28A1Q2UY09 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.08■□□□□ 0.16
COL28A1Q2UY09 AC133963.1-201ENST00000504166 1679 ntBASIC16.08■□□□□ 0.16
COL28A1Q2UY09 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL28A1Q2UY09 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.08■□□□□ 0.16
COL28A1Q2UY09 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL28A1Q2UY09 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC16.08■□□□□ 0.16
COL28A1Q2UY09 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL28A1Q2UY09 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL28A1Q2UY09 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL28A1Q2UY09 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL28A1Q2UY09 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL28A1Q2UY09 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL28A1Q2UY09 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL28A1Q2UY09 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL28A1Q2UY09 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL28A1Q2UY09 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL28A1Q2UY09 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
COL28A1Q2UY09 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.07■□□□□ 0.16
COL28A1Q2UY09 AC092580.3-201ENST00000430932 139 ntBASIC16.07■□□□□ 0.16
COL28A1Q2UY09 SPDYE14P-201ENST00000442619 822 ntBASIC16.07■□□□□ 0.16
COL28A1Q2UY09 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC16.07■□□□□ 0.16
COL28A1Q2UY09 PPP6R2P1-201ENST00000450880 1275 ntBASIC16.07■□□□□ 0.16
COL28A1Q2UY09 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC16.07■□□□□ 0.16
COL28A1Q2UY09 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.07■□□□□ 0.16
COL28A1Q2UY09 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL28A1Q2UY09 AL135744.1-201ENST00000565098 629 ntBASIC16.07■□□□□ 0.16
COL28A1Q2UY09 NAA38-206ENST00000576384 424 ntTSL 2 BASIC16.07■□□□□ 0.16
COL28A1Q2UY09 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
COL28A1Q2UY09 MIR6080-201ENST00000617359 66 ntBASIC16.07■□□□□ 0.16
COL28A1Q2UY09 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
COL28A1Q2UY09 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.07■□□□□ 0.16
COL28A1Q2UY09 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.07■□□□□ 0.16
COL28A1Q2UY09 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL28A1Q2UY09 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms