Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
HDAC4P56524 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HDAC4P56524 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC17.47■□□□□ 0.39
HDAC4P56524 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HDAC4P56524 AL512652.2-201ENST00000625156 1716 ntBASIC17.47■□□□□ 0.39
HDAC4P56524 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
HDAC4P56524 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HDAC4P56524 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HDAC4P56524 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HDAC4P56524 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HDAC4P56524 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HDAC4P56524 TEX30-205ENST00000376029 959 ntTSL 2 BASIC17.47■□□□□ 0.39
HDAC4P56524 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
HDAC4P56524 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC17.47■□□□□ 0.39
HDAC4P56524 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
HDAC4P56524 RHOQP3-201ENST00000437982 621 ntBASIC17.47■□□□□ 0.39
HDAC4P56524 KRT18P2-201ENST00000447938 1258 ntBASIC17.47■□□□□ 0.39
HDAC4P56524 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.47■□□□□ 0.39
HDAC4P56524 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
HDAC4P56524 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.47■□□□□ 0.39
HDAC4P56524 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC17.47■□□□□ 0.39
HDAC4P56524 AC096734.2-201ENST00000562054 433 ntBASIC17.47■□□□□ 0.39
HDAC4P56524 AC106730.1-201ENST00000566722 1090 ntBASIC17.47■□□□□ 0.39
HDAC4P56524 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HDAC4P56524 AC064836.3-201ENST00000607928 673 ntBASIC17.47■□□□□ 0.39
HDAC4P56524 WT1-AS_2.1-201ENST00000613208 137 ntBASIC17.47■□□□□ 0.39
HDAC4P56524 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
HDAC4P56524 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HDAC4P56524 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
HDAC4P56524 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HDAC4P56524 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HDAC4P56524 AL118508.1-201ENST00000613502 2345 ntBASIC17.47■□□□□ 0.39
HDAC4P56524 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
HDAC4P56524 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC17.47■□□□□ 0.39
HDAC4P56524 KRT8P39-201ENST00000396270 1433 ntBASIC17.47■□□□□ 0.39
HDAC4P56524 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
HDAC4P56524 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.46■□□□□ 0.39
HDAC4P56524 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HDAC4P56524 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
HDAC4P56524 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HDAC4P56524 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HDAC4P56524 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HDAC4P56524 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HDAC4P56524 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HDAC4P56524 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HDAC4P56524 AC007967.2-201ENST00000432613 625 ntBASIC17.46■□□□□ 0.39
HDAC4P56524 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC17.46■□□□□ 0.39
HDAC4P56524 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC17.46■□□□□ 0.39
HDAC4P56524 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC17.46■□□□□ 0.39
HDAC4P56524 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HDAC4P56524 MIR4515-201ENST00000584082 81 ntBASIC17.46■□□□□ 0.39
HDAC4P56524 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HDAC4P56524 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HDAC4P56524 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HDAC4P56524 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HDAC4P56524 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
HDAC4P56524 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HDAC4P56524 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HDAC4P56524 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HDAC4P56524 AC012569.1-201ENST00000591191 1524 ntBASIC17.46■□□□□ 0.39
HDAC4P56524 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HDAC4P56524 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.46■□□□□ 0.39
HDAC4P56524 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
HDAC4P56524 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
HDAC4P56524 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HDAC4P56524 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HDAC4P56524 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC17.45■□□□□ 0.38
HDAC4P56524 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HDAC4P56524 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.45■□□□□ 0.38
HDAC4P56524 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
HDAC4P56524 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
HDAC4P56524 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
HDAC4P56524 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HDAC4P56524 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HDAC4P56524 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
HDAC4P56524 HMGA1P7-201ENST00000406908 502 ntBASIC17.45■□□□□ 0.38
HDAC4P56524 AL513480.1-201ENST00000451731 511 ntBASIC17.45■□□□□ 0.38
HDAC4P56524 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC17.45■□□□□ 0.38
HDAC4P56524 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC17.45■□□□□ 0.38
HDAC4P56524 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.45■□□□□ 0.38
HDAC4P56524 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.45■□□□□ 0.38
HDAC4P56524 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.45■□□□□ 0.38
HDAC4P56524 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
HDAC4P56524 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC17.45■□□□□ 0.38
HDAC4P56524 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HDAC4P56524 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC17.45■□□□□ 0.38
HDAC4P56524 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC17.45■□□□□ 0.38
HDAC4P56524 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HDAC4P56524 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HDAC4P56524 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HDAC4P56524 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HDAC4P56524 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HDAC4P56524 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HDAC4P56524 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC17.45■□□□□ 0.38
HDAC4P56524 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
HDAC4P56524 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC17.44■□□□□ 0.38
HDAC4P56524 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.44■□□□□ 0.38
HDAC4P56524 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDAC4P56524 ZNF259P1-201ENST00000407656 1365 ntBASIC17.44■□□□□ 0.38
HDAC4P56524 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms