Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NUP98P52948 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
NUP98P52948 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC20.5■□□□□ 0.87
NUP98P52948 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NUP98P52948 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC20.5■□□□□ 0.87
NUP98P52948 AL136982.4-201ENST00000437689 1740 ntBASIC20.5■□□□□ 0.87
NUP98P52948 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
NUP98P52948 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NUP98P52948 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NUP98P52948 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NUP98P52948 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
NUP98P52948 AC098850.1-201ENST00000419919 790 ntBASIC20.5■□□□□ 0.87
NUP98P52948 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
NUP98P52948 AL353779.1-201ENST00000434793 351 ntBASIC20.5■□□□□ 0.87
NUP98P52948 GNAQP1-201ENST00000444815 1067 ntBASIC20.5■□□□□ 0.87
NUP98P52948 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC20.5■□□□□ 0.87
NUP98P52948 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC20.5■□□□□ 0.87
NUP98P52948 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NUP98P52948 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
NUP98P52948 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC20.5■□□□□ 0.87
NUP98P52948 TPRX2P-201ENST00000535362 881 ntBASIC20.5■□□□□ 0.87
NUP98P52948 HILS1-202ENST00000545329 423 ntBASIC20.5■□□□□ 0.87
NUP98P52948 AL033527.5-202ENST00000641632 1098 ntBASIC20.5■□□□□ 0.87
NUP98P52948 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NUP98P52948 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NUP98P52948 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NUP98P52948 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC20.5■□□□□ 0.87
NUP98P52948 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
NUP98P52948 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC20.5■□□□□ 0.87
NUP98P52948 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
NUP98P52948 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NUP98P52948 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC20.49■□□□□ 0.87
NUP98P52948 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NUP98P52948 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NUP98P52948 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
NUP98P52948 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC20.49■□□□□ 0.87
NUP98P52948 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC20.49■□□□□ 0.87
NUP98P52948 AC245100.5-201ENST00000452108 331 ntBASIC20.49■□□□□ 0.87
NUP98P52948 AC093004.1-201ENST00000508850 424 ntBASIC20.49■□□□□ 0.87
NUP98P52948 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC20.49■□□□□ 0.87
NUP98P52948 FTH1-202ENST00000526640 786 ntTSL 2 BASIC20.49■□□□□ 0.87
NUP98P52948 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC20.49■□□□□ 0.87
NUP98P52948 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NUP98P52948 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC20.49■□□□□ 0.87
NUP98P52948 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NUP98P52948 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
NUP98P52948 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NUP98P52948 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NUP98P52948 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NUP98P52948 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
NUP98P52948 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC20.49■□□□□ 0.87
NUP98P52948 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NUP98P52948 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NUP98P52948 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NUP98P52948 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
NUP98P52948 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NUP98P52948 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
NUP98P52948 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NUP98P52948 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC20.48■□□□□ 0.87
NUP98P52948 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NUP98P52948 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC20.48■□□□□ 0.87
NUP98P52948 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
NUP98P52948 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NUP98P52948 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC20.48■□□□□ 0.87
NUP98P52948 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC20.48■□□□□ 0.87
NUP98P52948 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NUP98P52948 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC20.48■□□□□ 0.87
NUP98P52948 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC20.48■□□□□ 0.87
NUP98P52948 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC20.48■□□□□ 0.87
NUP98P52948 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
NUP98P52948 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC20.48■□□□□ 0.87
NUP98P52948 AC138969.3-201ENST00000546612 1459 ntBASIC20.48■□□□□ 0.87
NUP98P52948 AC138932.2-201ENST00000548268 1459 ntBASIC20.48■□□□□ 0.87
NUP98P52948 AC126755.4-201ENST00000549796 1459 ntBASIC20.48■□□□□ 0.87
NUP98P52948 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NUP98P52948 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NUP98P52948 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC20.48■□□□□ 0.87
NUP98P52948 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NUP98P52948 GK-202ENST00000378941 458 ntTSL 3 BASIC20.48■□□□□ 0.87
NUP98P52948 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC20.48■□□□□ 0.87
NUP98P52948 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
NUP98P52948 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC20.48■□□□□ 0.87
NUP98P52948 AC078925.2-201ENST00000624013 1973 ntBASIC20.48■□□□□ 0.87
NUP98P52948 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
NUP98P52948 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
NUP98P52948 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC20.47■□□□□ 0.87
NUP98P52948 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NUP98P52948 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NUP98P52948 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
NUP98P52948 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC20.47■□□□□ 0.87
NUP98P52948 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC20.47■□□□□ 0.87
NUP98P52948 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NUP98P52948 SERBP1P3-201ENST00000459980 809 ntBASIC20.47■□□□□ 0.87
NUP98P52948 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NUP98P52948 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC20.47■□□□□ 0.87
NUP98P52948 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC20.47■□□□□ 0.87
NUP98P52948 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC20.47■□□□□ 0.87
NUP98P52948 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
NUP98P52948 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
NUP98P52948 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms