Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC22.84■■□□□ 1.25
MSH6P52701 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC22.84■■□□□ 1.25
MSH6P52701 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC22.84■■□□□ 1.25
MSH6P52701 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
MSH6P52701 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC22.84■■□□□ 1.25
MSH6P52701 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
MSH6P52701 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC22.84■■□□□ 1.25
MSH6P52701 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC22.84■■□□□ 1.25
MSH6P52701 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
MSH6P52701 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
MSH6P52701 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
MSH6P52701 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC22.84■■□□□ 1.25
MSH6P52701 SLC25A47P1-201ENST00000531577 414 ntBASIC22.84■■□□□ 1.25
MSH6P52701 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC22.84■■□□□ 1.25
MSH6P52701 EMC4-209ENST00000559421 497 ntTSL 2 BASIC22.84■■□□□ 1.25
MSH6P52701 MIR3615-201ENST00000581999 87 ntBASIC22.84■■□□□ 1.25
MSH6P52701 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC22.84■■□□□ 1.25
MSH6P52701 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC22.84■■□□□ 1.25
MSH6P52701 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC22.84■■□□□ 1.25
MSH6P52701 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC22.84■■□□□ 1.25
MSH6P52701 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC22.84■■□□□ 1.25
MSH6P52701 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC22.84■■□□□ 1.25
MSH6P52701 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
MSH6P52701 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC22.83■■□□□ 1.25
MSH6P52701 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC22.83■■□□□ 1.25
MSH6P52701 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC22.83■■□□□ 1.25
MSH6P52701 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
MSH6P52701 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
MSH6P52701 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
MSH6P52701 CD276-201ENST00000318424 2738 ntTSL 5 BASIC22.83■■□□□ 1.25
MSH6P52701 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
MSH6P52701 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC22.83■■□□□ 1.25
MSH6P52701 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
MSH6P52701 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
MSH6P52701 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
MSH6P52701 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC22.83■■□□□ 1.25
MSH6P52701 RARRES2P5-201ENST00000564013 466 ntBASIC22.83■■□□□ 1.25
MSH6P52701 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
MSH6P52701 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC22.83■■□□□ 1.25
MSH6P52701 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC22.83■■□□□ 1.24
MSH6P52701 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC22.83■■□□□ 1.24
MSH6P52701 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
MSH6P52701 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
MSH6P52701 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC22.82■■□□□ 1.24
MSH6P52701 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
MSH6P52701 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
MSH6P52701 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
MSH6P52701 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC22.82■■□□□ 1.24
MSH6P52701 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
MSH6P52701 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
MSH6P52701 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
MSH6P52701 SLC25A1P3-201ENST00000395415 828 ntBASIC22.82■■□□□ 1.24
MSH6P52701 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC22.82■■□□□ 1.24
MSH6P52701 RAD18-204ENST00000418463 563 ntTSL 4 BASIC22.82■■□□□ 1.24
MSH6P52701 RAD18-205ENST00000421052 582 ntTSL 3 BASIC22.82■■□□□ 1.24
MSH6P52701 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
MSH6P52701 PFN1P12-201ENST00000455938 534 ntBASIC22.82■■□□□ 1.24
MSH6P52701 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC22.82■■□□□ 1.24
MSH6P52701 MIR5189-201ENST00000577370 114 ntBASIC22.82■■□□□ 1.24
MSH6P52701 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC22.82■■□□□ 1.24
MSH6P52701 AC024267.1-201ENST00000582320 895 ntBASIC22.82■■□□□ 1.24
MSH6P52701 RN7SL190P-201ENST00000582519 257 ntBASIC22.82■■□□□ 1.24
MSH6P52701 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC22.82■■□□□ 1.24
MSH6P52701 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
MSH6P52701 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC22.82■■□□□ 1.24
MSH6P52701 AC074044.1-201ENST00000609673 707 ntBASIC22.82■■□□□ 1.24
MSH6P52701 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC22.82■■□□□ 1.24
MSH6P52701 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC22.82■■□□□ 1.24
MSH6P52701 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC22.82■■□□□ 1.24
MSH6P52701 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC22.82■■□□□ 1.24
MSH6P52701 AC007613.1-201ENST00000572811 2597 ntBASIC22.82■■□□□ 1.24
MSH6P52701 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
MSH6P52701 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
MSH6P52701 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
MSH6P52701 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
MSH6P52701 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC22.81■■□□□ 1.24
MSH6P52701 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC22.81■■□□□ 1.24
MSH6P52701 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
MSH6P52701 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC22.81■■□□□ 1.24
MSH6P52701 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC22.81■■□□□ 1.24
MSH6P52701 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC22.81■■□□□ 1.24
MSH6P52701 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
MSH6P52701 USB1-202ENST00000423271 1217 ntTSL 2 BASIC22.81■■□□□ 1.24
MSH6P52701 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC22.81■■□□□ 1.24
MSH6P52701 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC22.81■■□□□ 1.24
MSH6P52701 RNA5SP423-201ENST00000517127 109 ntBASIC22.81■■□□□ 1.24
MSH6P52701 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC22.81■■□□□ 1.24
MSH6P52701 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC22.81■■□□□ 1.24
MSH6P52701 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC22.81■■□□□ 1.24
MSH6P52701 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC22.81■■□□□ 1.24
MSH6P52701 DERL2-202ENST00000570848 657 ntTSL 5 BASIC22.81■■□□□ 1.24
MSH6P52701 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC22.81■■□□□ 1.24
MSH6P52701 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC22.81■■□□□ 1.24
MSH6P52701 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC22.81■■□□□ 1.24
MSH6P52701 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC22.81■■□□□ 1.24
MSH6P52701 PPA1-206ENST00000625364 644 ntTSL 5 BASIC22.81■■□□□ 1.24
MSH6P52701 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
MSH6P52701 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC22.81■■□□□ 1.24
MSH6P52701 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC22.81■■□□□ 1.24
MSH6P52701 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC22.81■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms