Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL18A1P39060 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC21.65■■□□□ 1.06
COL18A1P39060 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL18A1P39060 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COL18A1P39060 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC21.65■■□□□ 1.06
COL18A1P39060 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
COL18A1P39060 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
COL18A1P39060 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.06
COL18A1P39060 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL18A1P39060 AZGP1P1-201ENST00000411909 902 ntBASIC21.64■■□□□ 1.06
COL18A1P39060 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC21.64■■□□□ 1.06
COL18A1P39060 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
COL18A1P39060 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC21.64■■□□□ 1.06
COL18A1P39060 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC21.64■■□□□ 1.06
COL18A1P39060 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC21.64■■□□□ 1.06
COL18A1P39060 MIR5189-201ENST00000577370 114 ntBASIC21.64■■□□□ 1.06
COL18A1P39060 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC21.64■■□□□ 1.06
COL18A1P39060 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
COL18A1P39060 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL18A1P39060 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
COL18A1P39060 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
COL18A1P39060 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL18A1P39060 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC21.64■■□□□ 1.05
COL18A1P39060 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL18A1P39060 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
COL18A1P39060 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
COL18A1P39060 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL18A1P39060 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC21.64■■□□□ 1.05
COL18A1P39060 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
COL18A1P39060 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL18A1P39060 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL18A1P39060 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
COL18A1P39060 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL18A1P39060 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
COL18A1P39060 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
COL18A1P39060 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL18A1P39060 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL18A1P39060 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
COL18A1P39060 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC21.64■■□□□ 1.05
COL18A1P39060 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL18A1P39060 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC21.64■■□□□ 1.05
COL18A1P39060 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC21.64■■□□□ 1.05
COL18A1P39060 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC21.64■■□□□ 1.05
COL18A1P39060 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC21.64■■□□□ 1.05
COL18A1P39060 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
COL18A1P39060 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL18A1P39060 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL18A1P39060 AMT-206ENST00000458307 1860 ntTSL 2 BASIC21.63■■□□□ 1.05
COL18A1P39060 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
COL18A1P39060 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
COL18A1P39060 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC21.63■■□□□ 1.05
COL18A1P39060 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL18A1P39060 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL18A1P39060 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL18A1P39060 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC21.63■■□□□ 1.05
COL18A1P39060 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
COL18A1P39060 AC104989.1-201ENST00000519711 778 ntBASIC21.63■■□□□ 1.05
COL18A1P39060 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL18A1P39060 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC21.63■■□□□ 1.05
COL18A1P39060 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
COL18A1P39060 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC21.63■■□□□ 1.05
COL18A1P39060 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC21.63■■□□□ 1.05
COL18A1P39060 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL18A1P39060 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL18A1P39060 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
COL18A1P39060 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL18A1P39060 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL18A1P39060 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL18A1P39060 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL18A1P39060 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC21.62■■□□□ 1.05
COL18A1P39060 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL18A1P39060 RPF1-202ENST00000370656 724 ntTSL 2 BASIC21.62■■□□□ 1.05
COL18A1P39060 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
COL18A1P39060 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC21.62■■□□□ 1.05
COL18A1P39060 RPL28-204ENST00000431533 590 ntTSL 2 BASIC21.62■■□□□ 1.05
COL18A1P39060 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC21.62■■□□□ 1.05
COL18A1P39060 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
COL18A1P39060 RPL28-206ENST00000558752 671 ntTSL 3 BASIC21.62■■□□□ 1.05
COL18A1P39060 SNX12-206ENST00000622259 661 ntTSL 5 BASIC21.62■■□□□ 1.05
COL18A1P39060 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
COL18A1P39060 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC21.62■■□□□ 1.05
COL18A1P39060 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL18A1P39060 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL18A1P39060 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC21.62■■□□□ 1.05
COL18A1P39060 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL18A1P39060 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL18A1P39060 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL18A1P39060 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL18A1P39060 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
COL18A1P39060 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL18A1P39060 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL18A1P39060 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
COL18A1P39060 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC21.61■■□□□ 1.05
COL18A1P39060 AL391256.1-201ENST00000443260 1855 ntBASIC21.61■■□□□ 1.05
COL18A1P39060 PDIA3P1-201ENST00000471856 1510 ntBASIC21.61■■□□□ 1.05
COL18A1P39060 AP002490.2-201ENST00000524791 560 ntBASIC21.61■■□□□ 1.05
COL18A1P39060 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC21.61■■□□□ 1.05
COL18A1P39060 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC21.61■■□□□ 1.05
COL18A1P39060 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC21.61■■□□□ 1.05
COL18A1P39060 AC133552.6-201ENST00000613406 534 ntBASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms