Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC17.21■□□□□ 0.34
HMGA1P17096 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGA1P17096 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HMGA1P17096 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGA1P17096 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGA1P17096 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGA1P17096 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGA1P17096 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGA1P17096 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
HMGA1P17096 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
HMGA1P17096 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGA1P17096 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGA1P17096 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HMGA1P17096 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGA1P17096 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC17.2■□□□□ 0.34
HMGA1P17096 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HMGA1P17096 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HMGA1P17096 MRPS18AP1-201ENST00000414458 589 ntBASIC17.2■□□□□ 0.34
HMGA1P17096 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC17.2■□□□□ 0.34
HMGA1P17096 HNRNPA1P40-201ENST00000426371 1278 ntBASIC17.2■□□□□ 0.34
HMGA1P17096 HLA-J-202ENST00000469281 1241 ntBASIC17.2■□□□□ 0.34
HMGA1P17096 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC17.2■□□□□ 0.34
HMGA1P17096 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC17.2■□□□□ 0.34
HMGA1P17096 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC17.2■□□□□ 0.34
HMGA1P17096 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGA1P17096 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC17.2■□□□□ 0.34
HMGA1P17096 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC17.2■□□□□ 0.34
HMGA1P17096 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
HMGA1P17096 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC17.2■□□□□ 0.34
HMGA1P17096 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC17.2■□□□□ 0.34
HMGA1P17096 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HMGA1P17096 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.2■□□□□ 0.34
HMGA1P17096 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGA1P17096 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGA1P17096 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HMGA1P17096 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGA1P17096 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.2■□□□□ 0.34
HMGA1P17096 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGA1P17096 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGA1P17096 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGA1P17096 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC17.2■□□□□ 0.34
HMGA1P17096 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGA1P17096 GRAMD4P3-201ENST00000621665 1669 ntBASIC17.2■□□□□ 0.34
HMGA1P17096 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.2■□□□□ 0.34
HMGA1P17096 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGA1P17096 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HMGA1P17096 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGA1P17096 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HMGA1P17096 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGA1P17096 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
HMGA1P17096 AL035456.1-201ENST00000456064 1369 ntBASIC17.19■□□□□ 0.34
HMGA1P17096 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGA1P17096 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
HMGA1P17096 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGA1P17096 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HMGA1P17096 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.19■□□□□ 0.34
HMGA1P17096 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
HMGA1P17096 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGA1P17096 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC17.19■□□□□ 0.34
HMGA1P17096 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC17.19■□□□□ 0.34
HMGA1P17096 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGA1P17096 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGA1P17096 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGA1P17096 AL353705.2-201ENST00000428243 662 ntBASIC17.19■□□□□ 0.34
HMGA1P17096 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC17.19■□□□□ 0.34
HMGA1P17096 COX20P2-201ENST00000452636 358 ntBASIC17.19■□□□□ 0.34
HMGA1P17096 AL512638.1-201ENST00000457493 794 ntBASIC17.19■□□□□ 0.34
HMGA1P17096 HLA-V-204ENST00000476601 1289 ntBASIC17.19■□□□□ 0.34
HMGA1P17096 RNA5SP410-201ENST00000516285 106 ntBASIC17.19■□□□□ 0.34
HMGA1P17096 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC17.19■□□□□ 0.34
HMGA1P17096 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC17.19■□□□□ 0.34
HMGA1P17096 LITAF-210ENST00000571976 548 ntTSL 2 BASIC17.19■□□□□ 0.34
HMGA1P17096 LITAF-214ENST00000574703 486 ntTSL 2 BASIC17.19■□□□□ 0.34
HMGA1P17096 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC17.19■□□□□ 0.34
HMGA1P17096 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC17.19■□□□□ 0.34
HMGA1P17096 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGA1P17096 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.19■□□□□ 0.34
HMGA1P17096 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HMGA1P17096 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.19■□□□□ 0.34
HMGA1P17096 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGA1P17096 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGA1P17096 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HMGA1P17096 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HMGA1P17096 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
HMGA1P17096 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
HMGA1P17096 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HMGA1P17096 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGA1P17096 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
HMGA1P17096 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGA1P17096 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
HMGA1P17096 AL589702.1-201ENST00000641229 1509 ntBASIC17.18■□□□□ 0.34
HMGA1P17096 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.18■□□□□ 0.34
HMGA1P17096 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17.18■□□□□ 0.34
HMGA1P17096 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGA1P17096 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HMGA1P17096 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGA1P17096 OARD1-208ENST00000469104 704 ntTSL 2 BASIC17.18■□□□□ 0.34
HMGA1P17096 MAX-210ENST00000555419 765 ntTSL 5 BASIC17.18■□□□□ 0.34
HMGA1P17096 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC17.18■□□□□ 0.34
HMGA1P17096 RN7SL828P-201ENST00000607615 303 ntBASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms