Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC005077.2-201ENST00000449786 690 ntBASIC17.03■□□□□ 0.32
VCANP13611 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC17.03■□□□□ 0.32
VCANP13611 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC17.03■□□□□ 0.32
VCANP13611 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC17.03■□□□□ 0.32
VCANP13611 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.03■□□□□ 0.32
VCANP13611 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCANP13611 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VCANP13611 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC17.03■□□□□ 0.32
VCANP13611 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCANP13611 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC17.03■□□□□ 0.32
VCANP13611 AC018470.1-201ENST00000624790 3129 ntBASIC17.03■□□□□ 0.32
VCANP13611 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCANP13611 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCANP13611 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VCANP13611 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.03■□□□□ 0.32
VCANP13611 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
VCANP13611 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VCANP13611 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC17.02■□□□□ 0.32
VCANP13611 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VCANP13611 SCARNA20.5-201ENST00000516991 142 ntBASIC17.02■□□□□ 0.32
VCANP13611 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC17.02■□□□□ 0.32
VCANP13611 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
VCANP13611 AMT-232ENST00000636199 1546 ntTSL 5 BASIC17.02■□□□□ 0.32
VCANP13611 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VCANP13611 AC009113.1-201ENST00000570267 2443 ntBASIC17.02■□□□□ 0.32
VCANP13611 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VCANP13611 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VCANP13611 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
VCANP13611 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VCANP13611 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VCANP13611 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC17.02■□□□□ 0.32
VCANP13611 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VCANP13611 MIR1227-201ENST00000408484 88 ntBASIC17.02■□□□□ 0.32
VCANP13611 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.02■□□□□ 0.32
VCANP13611 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.02■□□□□ 0.32
VCANP13611 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC17.02■□□□□ 0.32
VCANP13611 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC17.02■□□□□ 0.32
VCANP13611 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC17.02■□□□□ 0.32
VCANP13611 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC17.02■□□□□ 0.32
VCANP13611 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC17.02■□□□□ 0.32
VCANP13611 AC131009.4-201ENST00000624048 1740 ntBASIC17.02■□□□□ 0.32
VCANP13611 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC17.02■□□□□ 0.32
VCANP13611 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
VCANP13611 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
VCANP13611 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
VCANP13611 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.31
VCANP13611 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
VCANP13611 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
VCANP13611 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.02■□□□□ 0.31
VCANP13611 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC17.02■□□□□ 0.31
VCANP13611 PP14571-201ENST00000404327 934 ntTSL 2 BASIC17.02■□□□□ 0.31
VCANP13611 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC17.02■□□□□ 0.31
VCANP13611 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC17.02■□□□□ 0.31
VCANP13611 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VCANP13611 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
VCANP13611 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VCANP13611 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
VCANP13611 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.01■□□□□ 0.31
VCANP13611 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VCANP13611 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC17.01■□□□□ 0.31
VCANP13611 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC17.01■□□□□ 0.31
VCANP13611 AC002558.1-201ENST00000488906 803 ntBASIC17.01■□□□□ 0.31
VCANP13611 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC17.01■□□□□ 0.31
VCANP13611 AC004461.2-201ENST00000629517 803 ntBASIC17.01■□□□□ 0.31
VCANP13611 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
VCANP13611 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VCANP13611 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VCANP13611 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.01■□□□□ 0.31
VCANP13611 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
VCANP13611 AC018735.1-201ENST00000437208 1502 ntBASIC17.01■□□□□ 0.31
VCANP13611 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VCANP13611 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.01■□□□□ 0.31
VCANP13611 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VCANP13611 FNTAP2-201ENST00000430308 634 ntBASIC17.01■□□□□ 0.31
VCANP13611 FTH1P14-201ENST00000482930 551 ntBASIC17.01■□□□□ 0.31
VCANP13611 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC17.01■□□□□ 0.31
VCANP13611 AL671710.1-201ENST00000610245 2349 ntBASIC17.01■□□□□ 0.31
VCANP13611 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VCANP13611 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VCANP13611 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VCANP13611 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.01■□□□□ 0.31
VCANP13611 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
VCANP13611 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17■□□□□ 0.31
VCANP13611 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VCANP13611 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VCANP13611 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VCANP13611 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC17■□□□□ 0.31
VCANP13611 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC17■□□□□ 0.31
VCANP13611 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC17■□□□□ 0.31
VCANP13611 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VCANP13611 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17■□□□□ 0.31
VCANP13611 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17■□□□□ 0.31
VCANP13611 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17■□□□□ 0.31
VCANP13611 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VCANP13611 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17■□□□□ 0.31
VCANP13611 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC17■□□□□ 0.31
VCANP13611 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VCANP13611 Z93015.1-201ENST00000451718 390 ntBASIC17■□□□□ 0.31
VCANP13611 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC17■□□□□ 0.31
VCANP13611 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms