Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VIMP08670 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VIMP08670 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
VIMP08670 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
VIMP08670 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
VIMP08670 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
VIMP08670 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VIMP08670 INGX-201ENST00000359239 846 ntBASIC16.86■□□□□ 0.29
VIMP08670 PEX7-202ENST00000367756 680 ntTSL 3 BASIC16.86■□□□□ 0.29
VIMP08670 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC16.86■□□□□ 0.29
VIMP08670 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
VIMP08670 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC16.86■□□□□ 0.29
VIMP08670 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC16.86■□□□□ 0.29
VIMP08670 GCSHP5-201ENST00000443090 522 ntBASIC16.86■□□□□ 0.29
VIMP08670 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VIMP08670 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.86■□□□□ 0.29
VIMP08670 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC16.86■□□□□ 0.29
VIMP08670 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC16.86■□□□□ 0.29
VIMP08670 AL512604.3-201ENST00000569583 964 ntBASIC16.86■□□□□ 0.29
VIMP08670 AC111152.3-201ENST00000569699 673 ntBASIC16.86■□□□□ 0.29
VIMP08670 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC16.86■□□□□ 0.29
VIMP08670 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
VIMP08670 AP006294.2-201ENST00000641667 209 ntBASIC16.86■□□□□ 0.29
VIMP08670 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VIMP08670 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.86■□□□□ 0.29
VIMP08670 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VIMP08670 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VIMP08670 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VIMP08670 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VIMP08670 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
VIMP08670 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VIMP08670 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
VIMP08670 AP005117.1-202ENST00000581724 1908 ntBASIC16.86■□□□□ 0.29
VIMP08670 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
VIMP08670 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VIMP08670 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VIMP08670 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.85■□□□□ 0.29
VIMP08670 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
VIMP08670 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
VIMP08670 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
VIMP08670 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VIMP08670 AC006058.4-201ENST00000624016 1670 ntBASIC16.85■□□□□ 0.29
VIMP08670 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.85■□□□□ 0.29
VIMP08670 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VIMP08670 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.85■□□□□ 0.29
VIMP08670 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VIMP08670 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
VIMP08670 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.85■□□□□ 0.29
VIMP08670 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
VIMP08670 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.85■□□□□ 0.29
VIMP08670 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VIMP08670 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VIMP08670 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.85■□□□□ 0.29
VIMP08670 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
VIMP08670 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
VIMP08670 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
VIMP08670 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VIMP08670 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC16.85■□□□□ 0.29
VIMP08670 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC16.85■□□□□ 0.29
VIMP08670 AC034232.1-201ENST00000506026 1064 ntBASIC16.85■□□□□ 0.29
VIMP08670 RPS20-210ENST00000523936 899 ntTSL 2 BASIC16.85■□□□□ 0.29
VIMP08670 FITM1-202ENST00000559294 800 ntBASIC16.85■□□□□ 0.29
VIMP08670 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC16.85■□□□□ 0.29
VIMP08670 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
VIMP08670 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC16.85■□□□□ 0.29
VIMP08670 AP000525.1-201ENST00000608286 694 ntBASIC16.85■□□□□ 0.29
VIMP08670 ANKRD20A8P-203ENST00000641373 517 ntBASIC16.85■□□□□ 0.29
VIMP08670 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.85■□□□□ 0.29
VIMP08670 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.85■□□□□ 0.29
VIMP08670 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC16.85■□□□□ 0.29
VIMP08670 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC16.85■□□□□ 0.29
VIMP08670 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
VIMP08670 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VIMP08670 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC16.85■□□□□ 0.29
VIMP08670 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
VIMP08670 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VIMP08670 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
VIMP08670 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VIMP08670 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
VIMP08670 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VIMP08670 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC16.85■□□□□ 0.29
VIMP08670 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VIMP08670 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VIMP08670 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
VIMP08670 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VIMP08670 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VIMP08670 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VIMP08670 AL391807.1-203ENST00000604392 2365 ntBASIC16.85■□□□□ 0.29
VIMP08670 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VIMP08670 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC16.85■□□□□ 0.29
VIMP08670 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
VIMP08670 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
VIMP08670 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VIMP08670 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
VIMP08670 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VIMP08670 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VIMP08670 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
VIMP08670 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VIMP08670 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
VIMP08670 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms