Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 MDFI-202ENST00000373050 809 ntTSL 2 BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 AP000523.1-201ENST00000398242 1049 ntBASIC12.28□□□□□ -0.44
SMKR1H3BMG3 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 AC007967.3-201ENST00000434308 558 ntBASIC12.28□□□□□ -0.44
SMKR1H3BMG3 AL158047.1-201ENST00000445918 881 ntBASIC12.28□□□□□ -0.44
SMKR1H3BMG3 UBE2SP1-201ENST00000450587 669 ntBASIC12.28□□□□□ -0.44
SMKR1H3BMG3 ECEL1P2-202ENST00000465689 757 ntBASIC12.28□□□□□ -0.44
SMKR1H3BMG3 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 CD99P1-205ENST00000527459 561 ntBASIC12.28□□□□□ -0.44
SMKR1H3BMG3 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 AC111152.3-201ENST00000569699 673 ntBASIC12.28□□□□□ -0.44
SMKR1H3BMG3 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 AC097374.2-201ENST00000618617 1306 ntBASIC12.28□□□□□ -0.44
SMKR1H3BMG3 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
SMKR1H3BMG3 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC12.27□□□□□ -0.44
SMKR1H3BMG3 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC12.27□□□□□ -0.44
SMKR1H3BMG3 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
SMKR1H3BMG3 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
SMKR1H3BMG3 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.44
SMKR1H3BMG3 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
SMKR1H3BMG3 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
SMKR1H3BMG3 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC12.27□□□□□ -0.44
SMKR1H3BMG3 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.44
SMKR1H3BMG3 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
SMKR1H3BMG3 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC12.27□□□□□ -0.44
SMKR1H3BMG3 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
SMKR1H3BMG3 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
SMKR1H3BMG3 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC12.27□□□□□ -0.44
SMKR1H3BMG3 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
SMKR1H3BMG3 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC12.27□□□□□ -0.44
SMKR1H3BMG3 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
SMKR1H3BMG3 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
SMKR1H3BMG3 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
SMKR1H3BMG3 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.44
SMKR1H3BMG3 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.44
SMKR1H3BMG3 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
SMKR1H3BMG3 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC12.27□□□□□ -0.44
SMKR1H3BMG3 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
SMKR1H3BMG3 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
SMKR1H3BMG3 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
SMKR1H3BMG3 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC12.27□□□□□ -0.45
SMKR1H3BMG3 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC12.27□□□□□ -0.45
SMKR1H3BMG3 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
SMKR1H3BMG3 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
SMKR1H3BMG3 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
SMKR1H3BMG3 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC12.27□□□□□ -0.45
SMKR1H3BMG3 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms