Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.62■□□□□ 0.25
TRIM39Q9HCM9 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM39Q9HCM9 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM39Q9HCM9 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 AC006277.1-201ENST00000624348 1610 ntBASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 GPX1P2-201ENST00000429271 606 ntBASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 AC140658.5-201ENST00000438532 169 ntBASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 THTPA-204ENST00000554970 569 ntTSL 4 BASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 THTPA-206ENST00000556015 535 ntTSL 3 BASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 AC005829.1-201ENST00000570002 483 ntBASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 AP002472.1-201ENST00000577490 586 ntBASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 AC010327.4-202ENST00000591484 748 ntBASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM39Q9HCM9 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 LINC00895-201ENST00000629028 1637 ntBASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 MKNK2P1-201ENST00000437526 628 ntBASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 CYP2A7P1-201ENST00000595391 815 ntBASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 AC018695.7-201ENST00000624587 2492 ntBASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.6■□□□□ 0.25
TRIM39Q9HCM9 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 NEK7-201ENST00000367383 586 ntTSL 2 BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 COA5-202ENST00000409997 557 ntTSL 4 BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.59■□□□□ 0.25
TRIM39Q9HCM9 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms