Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 MEP1AP4-201ENST00000423244 1087 ntBASIC16.3■□□□□ 0.2
VPS13AQ96RL7 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 KLF2P4-201ENST00000451959 1225 ntBASIC16.3■□□□□ 0.2
VPS13AQ96RL7 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 AP001258.2-201ENST00000529891 490 ntBASIC16.3■□□□□ 0.2
VPS13AQ96RL7 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 PP12613-201ENST00000424958 2230 ntBASIC16.29■□□□□ 0.2
VPS13AQ96RL7 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 RN7SL560P-201ENST00000577943 264 ntBASIC16.29■□□□□ 0.2
VPS13AQ96RL7 AC233724.13-201ENST00000598383 410 ntBASIC16.29■□□□□ 0.2
VPS13AQ96RL7 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 AMT-232ENST00000636199 1546 ntTSL 5 BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 LBX2-201ENST00000341396 886 ntTSL 3 BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 FADS2-212ENST00000522639 360 ntTSL 5 BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 AP000812.2-201ENST00000538934 718 ntBASIC16.29■□□□□ 0.2
VPS13AQ96RL7 DERL2-202ENST00000570848 657 ntTSL 5 BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 FADS2-215ENST00000574708 385 ntTSL 3 BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
VPS13AQ96RL7 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS13AQ96RL7 HINT2P1-201ENST00000419438 481 ntBASIC16.28■□□□□ 0.2
VPS13AQ96RL7 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS13AQ96RL7 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC16.28■□□□□ 0.2
VPS13AQ96RL7 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS13AQ96RL7 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
VPS13AQ96RL7 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS13AQ96RL7 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.28■□□□□ 0.2
VPS13AQ96RL7 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VPS13AQ96RL7 LDHBP1-201ENST00000455730 1119 ntBASIC16.28■□□□□ 0.2
VPS13AQ96RL7 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VPS13AQ96RL7 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC16.28■□□□□ 0.2
VPS13AQ96RL7 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC16.28■□□□□ 0.2
VPS13AQ96RL7 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS13AQ96RL7 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS13AQ96RL7 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VPS13AQ96RL7 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.28■□□□□ 0.2
VPS13AQ96RL7 LOX-206ENST00000639739 1626 ntTSL 5 BASIC16.28■□□□□ 0.2
VPS13AQ96RL7 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS13AQ96RL7 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
VPS13AQ96RL7 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC16.28■□□□□ 0.2
VPS13AQ96RL7 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC16.28■□□□□ 0.2
VPS13AQ96RL7 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC16.28■□□□□ 0.2
VPS13AQ96RL7 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VPS13AQ96RL7 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VPS13AQ96RL7 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VPS13AQ96RL7 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS13AQ96RL7 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC16.27■□□□□ 0.2
VPS13AQ96RL7 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VPS13AQ96RL7 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC16.27■□□□□ 0.2
VPS13AQ96RL7 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS13AQ96RL7 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VPS13AQ96RL7 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS13AQ96RL7 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS13AQ96RL7 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.2
VPS13AQ96RL7 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
VPS13AQ96RL7 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS13AQ96RL7 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VPS13AQ96RL7 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
VPS13AQ96RL7 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC16.27■□□□□ 0.2
VPS13AQ96RL7 AC079328.1-201ENST00000560358 952 ntBASIC16.27■□□□□ 0.2
VPS13AQ96RL7 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.27■□□□□ 0.2
VPS13AQ96RL7 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS13AQ96RL7 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC16.27■□□□□ 0.2
VPS13AQ96RL7 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms