Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 SIGLEC29P-201ENST00000599873 1114 ntBASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 AC073439.1-201ENST00000624121 1774 ntBASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 FAM220BP-201ENST00000377689 816 ntBASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 COX5BP8-201ENST00000416911 349 ntBASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 NME2P1-201ENST00000426182 414 ntBASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 HLA-J-202ENST00000469281 1241 ntBASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 REEP4-207ENST00000523293 913 ntTSL 3 BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 TEX28P1-201ENST00000613479 1221 ntBASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 TEX28P2-201ENST00000617764 1221 ntBASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS3Q8IXF0 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 MEIS3P1-201ENST00000495167 958 ntBASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 SPTSSB-204ENST00000617024 1292 ntBASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 SRP9-204ENST00000619790 377 ntTSL 2 BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 RAB34-223ENST00000636154 730 ntTSL 2 BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
NPAS3Q8IXF0 OR6D1P-202ENST00000641007 5290 ntBASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms