Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 FAM185BP-201ENST00000443595 716 ntBASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 TSPY16P-201ENST00000449843 468 ntBASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 AC067863.1-201ENST00000494933 530 ntBASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 KRT8P48-201ENST00000515599 1220 ntBASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 AC087641.1-201ENST00000557561 1021 ntBASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 NAA60-208ENST00000570819 833 ntTSL 2 BASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SH3RF1Q7Z6J0 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 TUBB8P12-201ENST00000308911 1335 ntBASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 TUBB7P-202ENST00000428444 1305 ntBASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 TUBB8P7-204ENST00000567960 1332 ntBASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 TERF1P3-201ENST00000505638 1227 ntBASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 GATB-205ENST00000508611 605 ntTSL 2 BASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 AC112191.1-201ENST00000523689 701 ntBASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SH3RF1Q7Z6J0 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 NABP1-203ENST00000409510 843 ntTSL 5 BASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 AL513480.1-201ENST00000451731 511 ntBASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 AC051619.7-201ENST00000568314 623 ntBASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 AC026120.1-201ENST00000611536 926 ntBASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 ACTL9-202ENST00000612068 1252 ntBASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SH3RF1Q7Z6J0 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
SH3RF1Q7Z6J0 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC19.1■□□□□ 0.65
SH3RF1Q7Z6J0 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SH3RF1Q7Z6J0 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SH3RF1Q7Z6J0 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SH3RF1Q7Z6J0 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC19.1■□□□□ 0.65
SH3RF1Q7Z6J0 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms