Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
VPS13CQ709C8 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC13.74□□□□□ -0.21
VPS13CQ709C8 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13CQ709C8 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13CQ709C8 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13CQ709C8 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC13.74□□□□□ -0.21
VPS13CQ709C8 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC13.74□□□□□ -0.21
VPS13CQ709C8 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC13.74□□□□□ -0.21
VPS13CQ709C8 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC13.74□□□□□ -0.21
VPS13CQ709C8 AL033527.5-201ENST00000641382 801 ntBASIC13.74□□□□□ -0.21
VPS13CQ709C8 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13CQ709C8 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13CQ709C8 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC13.74□□□□□ -0.21
VPS13CQ709C8 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13CQ709C8 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
VPS13CQ709C8 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC13.74□□□□□ -0.21
VPS13CQ709C8 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13CQ709C8 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13CQ709C8 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC13.74□□□□□ -0.21
VPS13CQ709C8 GOLGA2P9-201ENST00000596977 1937 ntBASIC13.74□□□□□ -0.21
VPS13CQ709C8 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13CQ709C8 NOC2LP1-202ENST00000452600 2235 ntBASIC13.74□□□□□ -0.21
VPS13CQ709C8 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13CQ709C8 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13CQ709C8 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13CQ709C8 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS13CQ709C8 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
VPS13CQ709C8 MPV17-206ENST00000402722 827 ntTSL 3 BASIC13.74□□□□□ -0.21
VPS13CQ709C8 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC13.74□□□□□ -0.21
VPS13CQ709C8 MIR8072-201ENST00000614241 80 ntBASIC13.74□□□□□ -0.21
VPS13CQ709C8 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC13.74□□□□□ -0.21
VPS13CQ709C8 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13CQ709C8 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
VPS13CQ709C8 AL138781.2-201ENST00000617896 1843 ntBASIC13.73□□□□□ -0.21
VPS13CQ709C8 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13CQ709C8 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13CQ709C8 PP14571-201ENST00000404327 934 ntTSL 2 BASIC13.73□□□□□ -0.21
VPS13CQ709C8 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC13.73□□□□□ -0.21
VPS13CQ709C8 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC13.73□□□□□ -0.21
VPS13CQ709C8 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC13.73□□□□□ -0.21
VPS13CQ709C8 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC13.73□□□□□ -0.21
VPS13CQ709C8 ARL16-210ENST00000574938 751 ntTSL 2 BASIC13.73□□□□□ -0.21
VPS13CQ709C8 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC13.73□□□□□ -0.21
VPS13CQ709C8 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC13.73□□□□□ -0.21
VPS13CQ709C8 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC13.73□□□□□ -0.21
VPS13CQ709C8 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13CQ709C8 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC13.73□□□□□ -0.21
VPS13CQ709C8 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13CQ709C8 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC13.73□□□□□ -0.21
VPS13CQ709C8 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13CQ709C8 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13CQ709C8 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC13.73□□□□□ -0.21
VPS13CQ709C8 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC13.73□□□□□ -0.21
VPS13CQ709C8 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC13.73□□□□□ -0.21
VPS13CQ709C8 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13CQ709C8 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13CQ709C8 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC13.73□□□□□ -0.21
VPS13CQ709C8 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC13.73□□□□□ -0.21
VPS13CQ709C8 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
VPS13CQ709C8 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13CQ709C8 AC093525.8-201ENST00000624099 1342 ntBASIC13.73□□□□□ -0.21
VPS13CQ709C8 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13CQ709C8 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC13.73□□□□□ -0.21
VPS13CQ709C8 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13CQ709C8 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13CQ709C8 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13CQ709C8 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13CQ709C8 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13CQ709C8 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13CQ709C8 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC13.73□□□□□ -0.21
VPS13CQ709C8 AC093004.1-201ENST00000508850 424 ntBASIC13.73□□□□□ -0.21
VPS13CQ709C8 SRD5A3P1-201ENST00000603021 949 ntBASIC13.73□□□□□ -0.21
VPS13CQ709C8 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC13.73□□□□□ -0.21
VPS13CQ709C8 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13CQ709C8 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS13CQ709C8 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC13.72□□□□□ -0.21
VPS13CQ709C8 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC13.72□□□□□ -0.21
VPS13CQ709C8 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
VPS13CQ709C8 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
VPS13CQ709C8 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
VPS13CQ709C8 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC13.72□□□□□ -0.21
VPS13CQ709C8 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
VPS13CQ709C8 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
VPS13CQ709C8 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
VPS13CQ709C8 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
VPS13CQ709C8 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC13.72□□□□□ -0.21
VPS13CQ709C8 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
VPS13CQ709C8 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC13.72□□□□□ -0.21
VPS13CQ709C8 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC13.72□□□□□ -0.21
VPS13CQ709C8 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC13.72□□□□□ -0.21
VPS13CQ709C8 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC13.72□□□□□ -0.21
VPS13CQ709C8 AC007389.4-201ENST00000454674 793 ntBASIC13.72□□□□□ -0.21
VPS13CQ709C8 AC092337.1-201ENST00000568699 1129 ntBASIC13.72□□□□□ -0.21
VPS13CQ709C8 NAT9-224ENST00000583757 583 ntTSL 3 BASIC13.72□□□□□ -0.21
VPS13CQ709C8 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
VPS13CQ709C8 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
VPS13CQ709C8 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC13.72□□□□□ -0.21
VPS13CQ709C8 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
VPS13CQ709C8 AC068880.1-201ENST00000507289 2297 ntBASIC13.72□□□□□ -0.21
VPS13CQ709C8 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC13.72□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms