Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 TEX30-205ENST00000376029 959 ntTSL 2 BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 HCG4-201ENST00000418983 998 ntBASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 PMS2P1-201ENST00000431037 1228 ntBASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 CRCP-205ENST00000431089 942 ntTSL 2 BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 HCG4B-203ENST00000450128 991 ntBASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 AC087641.1-201ENST00000557561 1021 ntBASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 HARS-204ENST00000438307 1789 ntTSL 2 BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 AC078925.2-201ENST00000624013 1973 ntBASIC19.72■□□□□ 0.75
SYNE3Q6ZMZ3 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
SYNE3Q6ZMZ3 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC19.71■□□□□ 0.75
SYNE3Q6ZMZ3 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC19.71■□□□□ 0.75
SYNE3Q6ZMZ3 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
SYNE3Q6ZMZ3 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
SYNE3Q6ZMZ3 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC19.71■□□□□ 0.75
SYNE3Q6ZMZ3 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SYNE3Q6ZMZ3 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SYNE3Q6ZMZ3 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SYNE3Q6ZMZ3 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SYNE3Q6ZMZ3 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
SYNE3Q6ZMZ3 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC19.71■□□□□ 0.75
SYNE3Q6ZMZ3 AL513480.1-201ENST00000451731 511 ntBASIC19.71■□□□□ 0.75
SYNE3Q6ZMZ3 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SYNE3Q6ZMZ3 POLD4-207ENST00000531239 584 ntTSL 2 BASIC19.71■□□□□ 0.75
SYNE3Q6ZMZ3 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC19.71■□□□□ 0.75
SYNE3Q6ZMZ3 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC19.71■□□□□ 0.75
SYNE3Q6ZMZ3 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC19.71■□□□□ 0.75
SYNE3Q6ZMZ3 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SYNE3Q6ZMZ3 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SYNE3Q6ZMZ3 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SYNE3Q6ZMZ3 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SYNE3Q6ZMZ3 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC19.71■□□□□ 0.75
SYNE3Q6ZMZ3 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SYNE3Q6ZMZ3 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SYNE3Q6ZMZ3 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SYNE3Q6ZMZ3 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
SYNE3Q6ZMZ3 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
SYNE3Q6ZMZ3 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SYNE3Q6ZMZ3 PC-204ENST00000524491 1714 ntTSL 2 BASIC19.71■□□□□ 0.75
SYNE3Q6ZMZ3 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 SLC25A1P1-201ENST00000528351 927 ntBASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 AC106730.1-201ENST00000566722 1090 ntBASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 MIR4492-201ENST00000581627 80 ntBASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms