Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CCNA1P78396 KRT8P39-201ENST00000396270 1433 ntBASIC18.91■□□□□ 0.62
CCNA1P78396 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
CCNA1P78396 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
CCNA1P78396 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CCNA1P78396 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CCNA1P78396 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC18.9■□□□□ 0.62
CCNA1P78396 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
CCNA1P78396 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCNA1P78396 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCNA1P78396 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCNA1P78396 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CCNA1P78396 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCNA1P78396 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCNA1P78396 AL390961.4-201ENST00000623958 2535 ntBASIC18.9■□□□□ 0.62
CCNA1P78396 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCNA1P78396 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC18.9■□□□□ 0.62
CCNA1P78396 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
CCNA1P78396 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC18.9■□□□□ 0.62
CCNA1P78396 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
CCNA1P78396 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC18.9■□□□□ 0.62
CCNA1P78396 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC18.9■□□□□ 0.62
CCNA1P78396 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CCNA1P78396 ZNF890P-202ENST00000530367 1156 ntBASIC18.9■□□□□ 0.62
CCNA1P78396 AC135586.1-201ENST00000539323 574 ntBASIC18.9■□□□□ 0.62
CCNA1P78396 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CCNA1P78396 NOP2-220ENST00000545915 630 ntTSL 2 BASIC18.9■□□□□ 0.62
CCNA1P78396 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
CCNA1P78396 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC18.9■□□□□ 0.62
CCNA1P78396 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC18.9■□□□□ 0.62
CCNA1P78396 AL133215.2-201ENST00000609242 977 ntBASIC18.9■□□□□ 0.62
CCNA1P78396 MIR6752-201ENST00000618442 71 ntBASIC18.9■□□□□ 0.62
CCNA1P78396 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCNA1P78396 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
CCNA1P78396 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
CCNA1P78396 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
CCNA1P78396 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCNA1P78396 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCNA1P78396 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CCNA1P78396 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CCNA1P78396 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCNA1P78396 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCNA1P78396 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCNA1P78396 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.9■□□□□ 0.62
CCNA1P78396 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.9■□□□□ 0.62
CCNA1P78396 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.9■□□□□ 0.62
CCNA1P78396 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCNA1P78396 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC18.89■□□□□ 0.61
CCNA1P78396 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CCNA1P78396 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.89■□□□□ 0.61
CCNA1P78396 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CCNA1P78396 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCNA1P78396 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCNA1P78396 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCNA1P78396 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCNA1P78396 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCNA1P78396 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCNA1P78396 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCNA1P78396 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CCNA1P78396 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC18.89■□□□□ 0.61
CCNA1P78396 AC087499.6-201ENST00000411576 835 ntBASIC18.89■□□□□ 0.61
CCNA1P78396 AL080243.2-201ENST00000418783 582 ntBASIC18.89■□□□□ 0.61
CCNA1P78396 DFFBP1-201ENST00000433250 979 ntBASIC18.89■□□□□ 0.61
CCNA1P78396 API5-211ENST00000534695 560 ntTSL 5 BASIC18.89■□□□□ 0.61
CCNA1P78396 BANF1P1-201ENST00000553684 263 ntBASIC18.89■□□□□ 0.61
CCNA1P78396 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CCNA1P78396 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC18.89■□□□□ 0.61
CCNA1P78396 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
CCNA1P78396 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC18.89■□□□□ 0.61
CCNA1P78396 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC18.89■□□□□ 0.61
CCNA1P78396 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC18.89■□□□□ 0.61
CCNA1P78396 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC18.89■□□□□ 0.61
CCNA1P78396 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CCNA1P78396 FHL2-212ENST00000607522 759 ntTSL 2 BASIC18.89■□□□□ 0.61
CCNA1P78396 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
CCNA1P78396 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCNA1P78396 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCNA1P78396 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCNA1P78396 AL391825.1-201ENST00000457671 1364 ntBASIC18.89■□□□□ 0.61
CCNA1P78396 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
CCNA1P78396 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCNA1P78396 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC18.89■□□□□ 0.61
CCNA1P78396 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCNA1P78396 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CCNA1P78396 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCNA1P78396 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCNA1P78396 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCNA1P78396 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCNA1P78396 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCNA1P78396 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCNA1P78396 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCNA1P78396 AL671710.1-201ENST00000610245 2349 ntBASIC18.88■□□□□ 0.61
CCNA1P78396 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCNA1P78396 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCNA1P78396 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCNA1P78396 RN7SL618P-201ENST00000477850 296 ntBASIC18.88■□□□□ 0.61
CCNA1P78396 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC18.88■□□□□ 0.61
CCNA1P78396 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC18.88■□□□□ 0.61
CCNA1P78396 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC18.88■□□□□ 0.61
CCNA1P78396 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms