Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NUP98P52948 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NUP98P52948 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
NUP98P52948 GGT3P-204ENST00000453783 1664 ntBASIC20.54■□□□□ 0.88
NUP98P52948 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NUP98P52948 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NUP98P52948 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NUP98P52948 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NUP98P52948 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NUP98P52948 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NUP98P52948 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC20.53■□□□□ 0.88
NUP98P52948 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC20.53■□□□□ 0.88
NUP98P52948 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC20.53■□□□□ 0.88
NUP98P52948 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NUP98P52948 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NUP98P52948 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC20.53■□□□□ 0.88
NUP98P52948 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
NUP98P52948 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NUP98P52948 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
NUP98P52948 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
NUP98P52948 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NUP98P52948 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
NUP98P52948 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
NUP98P52948 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
NUP98P52948 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC20.53■□□□□ 0.88
NUP98P52948 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
NUP98P52948 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NUP98P52948 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
NUP98P52948 PGF-202ENST00000405431 666 ntTSL 5 BASIC20.53■□□□□ 0.88
NUP98P52948 DFFBP1-201ENST00000433250 979 ntBASIC20.53■□□□□ 0.88
NUP98P52948 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC20.53■□□□□ 0.88
NUP98P52948 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NUP98P52948 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC20.53■□□□□ 0.88
NUP98P52948 IFT20-216ENST00000588477 774 ntTSL 5 BASIC20.53■□□□□ 0.88
NUP98P52948 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC20.53■□□□□ 0.88
NUP98P52948 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC20.53■□□□□ 0.88
NUP98P52948 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC20.53■□□□□ 0.88
NUP98P52948 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
NUP98P52948 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC20.52■□□□□ 0.88
NUP98P52948 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NUP98P52948 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC20.52■□□□□ 0.88
NUP98P52948 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NUP98P52948 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
NUP98P52948 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
NUP98P52948 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NUP98P52948 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
NUP98P52948 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
NUP98P52948 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
NUP98P52948 ACA64.2-201ENST00000459014 129 ntBASIC20.52■□□□□ 0.88
NUP98P52948 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NUP98P52948 PTK7-212ENST00000476760 902 ntTSL 2 BASIC20.52■□□□□ 0.88
NUP98P52948 AC023310.3-201ENST00000557027 670 ntBASIC20.52■□□□□ 0.88
NUP98P52948 AC100756.1-201ENST00000562736 682 ntBASIC20.52■□□□□ 0.88
NUP98P52948 AC138749.3-201ENST00000567691 622 ntBASIC20.52■□□□□ 0.88
NUP98P52948 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC20.52■□□□□ 0.88
NUP98P52948 SRD5A3P1-201ENST00000603021 949 ntBASIC20.52■□□□□ 0.88
NUP98P52948 AL365330.1-201ENST00000607459 531 ntBASIC20.52■□□□□ 0.88
NUP98P52948 AC116165.1-201ENST00000611806 668 ntBASIC20.52■□□□□ 0.88
NUP98P52948 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC20.52■□□□□ 0.88
NUP98P52948 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NUP98P52948 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.52■□□□□ 0.88
NUP98P52948 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NUP98P52948 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
NUP98P52948 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC20.52■□□□□ 0.87
NUP98P52948 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
NUP98P52948 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NUP98P52948 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC20.51■□□□□ 0.87
NUP98P52948 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
NUP98P52948 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NUP98P52948 AL589987.1-201ENST00000453380 819 ntBASIC20.51■□□□□ 0.87
NUP98P52948 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC20.51■□□□□ 0.87
NUP98P52948 AC055876.2-201ENST00000531834 546 ntBASIC20.51■□□□□ 0.87
NUP98P52948 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC20.51■□□□□ 0.87
NUP98P52948 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NUP98P52948 AC004461.2-201ENST00000629517 803 ntBASIC20.51■□□□□ 0.87
NUP98P52948 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC20.51■□□□□ 0.87
NUP98P52948 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NUP98P52948 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC20.51■□□□□ 0.87
NUP98P52948 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NUP98P52948 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC20.51■□□□□ 0.87
NUP98P52948 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NUP98P52948 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NUP98P52948 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC20.51■□□□□ 0.87
NUP98P52948 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NUP98P52948 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NUP98P52948 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NUP98P52948 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NUP98P52948 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
NUP98P52948 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC20.5■□□□□ 0.87
NUP98P52948 AP006294.1-201ENST00000415407 339 ntBASIC20.5■□□□□ 0.87
NUP98P52948 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC20.5■□□□□ 0.87
NUP98P52948 PTPA-220ENST00000436883 532 ntTSL 4 BASIC20.5■□□□□ 0.87
NUP98P52948 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NUP98P52948 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC20.5■□□□□ 0.87
NUP98P52948 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC20.5■□□□□ 0.87
NUP98P52948 AC092337.1-201ENST00000568699 1129 ntBASIC20.5■□□□□ 0.87
NUP98P52948 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC20.5■□□□□ 0.87
NUP98P52948 MIR4321-201ENST00000592276 80 ntBASIC20.5■□□□□ 0.87
NUP98P52948 AC008494.3-201ENST00000606615 944 ntBASIC20.5■□□□□ 0.87
NUP98P52948 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms