Protein–RNA interactions for Protein: P46934

NEDD4, E3 ubiquitin-protein ligase NEDD4, humanhuman

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4P46934 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC19.65■□□□□ 0.74
NEDD4P46934 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NEDD4P46934 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC19.65■□□□□ 0.74
NEDD4P46934 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NEDD4P46934 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NEDD4P46934 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NEDD4P46934 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC19.65■□□□□ 0.74
NEDD4P46934 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NEDD4P46934 CD99-202ENST00000381180 530 ntTSL 2 BASIC19.65■□□□□ 0.74
NEDD4P46934 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC19.65■□□□□ 0.74
NEDD4P46934 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC19.65■□□□□ 0.74
NEDD4P46934 CEND1P1-201ENST00000451006 455 ntBASIC19.65■□□□□ 0.74
NEDD4P46934 MIR3687-2-201ENST00000577708 61 ntBASIC19.65■□□□□ 0.74
NEDD4P46934 AC021097.1-201ENST00000607902 574 ntBASIC19.65■□□□□ 0.74
NEDD4P46934 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NEDD4P46934 MIR3687-1-201ENST00000614492 61 ntBASIC19.65■□□□□ 0.74
NEDD4P46934 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NEDD4P46934 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC19.65■□□□□ 0.74
NEDD4P46934 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
NEDD4P46934 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
NEDD4P46934 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC19.65■□□□□ 0.74
NEDD4P46934 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NEDD4P46934 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
NEDD4P46934 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
NEDD4P46934 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NEDD4P46934 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
NEDD4P46934 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
NEDD4P46934 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
NEDD4P46934 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
NEDD4P46934 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
NEDD4P46934 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC19.64■□□□□ 0.74
NEDD4P46934 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
NEDD4P46934 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.74
NEDD4P46934 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
NEDD4P46934 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.74
NEDD4P46934 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
NEDD4P46934 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC19.64■□□□□ 0.73
NEDD4P46934 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
NEDD4P46934 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NEDD4P46934 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NEDD4P46934 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NEDD4P46934 AL135744.1-201ENST00000565098 629 ntBASIC19.64■□□□□ 0.73
NEDD4P46934 RARRES2P8-201ENST00000566335 367 ntBASIC19.64■□□□□ 0.73
NEDD4P46934 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
NEDD4P46934 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC19.64■□□□□ 0.73
NEDD4P46934 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
NEDD4P46934 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
NEDD4P46934 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NEDD4P46934 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC19.64■□□□□ 0.73
NEDD4P46934 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NEDD4P46934 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
NEDD4P46934 GGT3P-204ENST00000453783 1664 ntBASIC19.64■□□□□ 0.73
NEDD4P46934 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC19.64■□□□□ 0.73
NEDD4P46934 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NEDD4P46934 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
NEDD4P46934 GPAA1P2-202ENST00000606848 1787 ntBASIC19.64■□□□□ 0.73
NEDD4P46934 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NEDD4P46934 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC19.64■□□□□ 0.73
NEDD4P46934 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NEDD4P46934 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
NEDD4P46934 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
NEDD4P46934 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NEDD4P46934 HCG11-201ENST00000411553 5696 ntBASIC19.63■□□□□ 0.73
NEDD4P46934 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NEDD4P46934 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NEDD4P46934 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC19.63■□□□□ 0.73
NEDD4P46934 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC19.63■□□□□ 0.73
NEDD4P46934 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NEDD4P46934 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NEDD4P46934 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NEDD4P46934 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
NEDD4P46934 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NEDD4P46934 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NEDD4P46934 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NEDD4P46934 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC19.63■□□□□ 0.73
NEDD4P46934 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NEDD4P46934 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC19.63■□□□□ 0.73
NEDD4P46934 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC19.63■□□□□ 0.73
NEDD4P46934 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC19.63■□□□□ 0.73
NEDD4P46934 KRT8P48-201ENST00000515599 1220 ntBASIC19.63■□□□□ 0.73
NEDD4P46934 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC19.63■□□□□ 0.73
NEDD4P46934 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC19.63■□□□□ 0.73
NEDD4P46934 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
NEDD4P46934 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
NEDD4P46934 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
NEDD4P46934 INO80E-210ENST00000567705 880 ntTSL 3 BASIC19.63■□□□□ 0.73
NEDD4P46934 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NEDD4P46934 AC139530.3-201ENST00000620344 690 ntBASIC19.63■□□□□ 0.73
NEDD4P46934 AC005052.1-201ENST00000625181 2492 ntBASIC19.63■□□□□ 0.73
NEDD4P46934 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NEDD4P46934 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
NEDD4P46934 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
NEDD4P46934 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC19.63■□□□□ 0.73
NEDD4P46934 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC19.63■□□□□ 0.73
NEDD4P46934 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
NEDD4P46934 PCDHA14-201ENST00000506751 2298 ntBASIC19.62■□□□□ 0.73
NEDD4P46934 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NEDD4P46934 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
NEDD4P46934 ALOX12P2-203ENST00000570921 1945 ntBASIC19.62■□□□□ 0.73
NEDD4P46934 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms