Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL2A1P02458 DFFBP1-201ENST00000433250 979 ntBASIC19.28■□□□□ 0.68
COL2A1P02458 AC135586.1-201ENST00000539323 574 ntBASIC19.28■□□□□ 0.68
COL2A1P02458 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL2A1P02458 CDK4-206ENST00000549606 558 ntTSL 2 BASIC19.28■□□□□ 0.68
COL2A1P02458 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC19.28■□□□□ 0.68
COL2A1P02458 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC19.28■□□□□ 0.68
COL2A1P02458 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC19.28■□□□□ 0.68
COL2A1P02458 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC19.28■□□□□ 0.68
COL2A1P02458 AL365330.1-201ENST00000607459 531 ntBASIC19.28■□□□□ 0.68
COL2A1P02458 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC19.28■□□□□ 0.68
COL2A1P02458 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL2A1P02458 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL2A1P02458 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC19.28■□□□□ 0.68
COL2A1P02458 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC19.28■□□□□ 0.68
COL2A1P02458 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL2A1P02458 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL2A1P02458 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL2A1P02458 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC19.28■□□□□ 0.68
COL2A1P02458 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
COL2A1P02458 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL2A1P02458 AL391825.1-201ENST00000457671 1364 ntBASIC19.28■□□□□ 0.68
COL2A1P02458 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC19.28■□□□□ 0.68
COL2A1P02458 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
COL2A1P02458 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL2A1P02458 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL2A1P02458 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC19.28■□□□□ 0.68
COL2A1P02458 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC19.28■□□□□ 0.68
COL2A1P02458 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL2A1P02458 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
COL2A1P02458 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC19.28■□□□□ 0.68
COL2A1P02458 TP53TG3HP-202ENST00000569755 579 ntBASIC19.28■□□□□ 0.68
COL2A1P02458 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL2A1P02458 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL2A1P02458 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC19.27■□□□□ 0.68
COL2A1P02458 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
COL2A1P02458 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC19.27■□□□□ 0.68
COL2A1P02458 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC19.27■□□□□ 0.68
COL2A1P02458 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL2A1P02458 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL2A1P02458 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC19.27■□□□□ 0.68
COL2A1P02458 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL2A1P02458 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL2A1P02458 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC19.27■□□□□ 0.68
COL2A1P02458 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL2A1P02458 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
COL2A1P02458 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC19.27■□□□□ 0.67
COL2A1P02458 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
COL2A1P02458 SPDYE18-201ENST00000510091 1050 ntBASIC19.27■□□□□ 0.67
COL2A1P02458 MIR4321-201ENST00000592276 80 ntBASIC19.27■□□□□ 0.67
COL2A1P02458 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC19.27■□□□□ 0.67
COL2A1P02458 5S_rRNA.22-201ENST00000614916 106 ntBASIC19.27■□□□□ 0.67
COL2A1P02458 AL033527.5-202ENST00000641632 1098 ntBASIC19.27■□□□□ 0.67
COL2A1P02458 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC19.27■□□□□ 0.67
COL2A1P02458 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL2A1P02458 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
COL2A1P02458 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL2A1P02458 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.26■□□□□ 0.67
COL2A1P02458 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
COL2A1P02458 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC19.26■□□□□ 0.67
COL2A1P02458 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL2A1P02458 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL2A1P02458 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL2A1P02458 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
COL2A1P02458 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC19.26■□□□□ 0.67
COL2A1P02458 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL2A1P02458 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC19.26■□□□□ 0.67
COL2A1P02458 AL139010.1-201ENST00000454878 894 ntBASIC19.26■□□□□ 0.67
COL2A1P02458 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL2A1P02458 AC093004.1-201ENST00000508850 424 ntBASIC19.26■□□□□ 0.67
COL2A1P02458 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC19.26■□□□□ 0.67
COL2A1P02458 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC19.26■□□□□ 0.67
COL2A1P02458 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC19.26■□□□□ 0.67
COL2A1P02458 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC19.26■□□□□ 0.67
COL2A1P02458 CU639417.3-201ENST00000624240 1404 ntBASIC19.26■□□□□ 0.67
COL2A1P02458 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.26■□□□□ 0.67
COL2A1P02458 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
COL2A1P02458 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL2A1P02458 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL2A1P02458 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC19.26■□□□□ 0.67
COL2A1P02458 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC19.26■□□□□ 0.67
COL2A1P02458 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC19.26■□□□□ 0.67
COL2A1P02458 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC19.25■□□□□ 0.67
COL2A1P02458 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL2A1P02458 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL2A1P02458 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL2A1P02458 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL2A1P02458 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC19.25■□□□□ 0.67
COL2A1P02458 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL2A1P02458 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL2A1P02458 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL2A1P02458 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
COL2A1P02458 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC19.25■□□□□ 0.67
COL2A1P02458 NME2P1-201ENST00000426182 414 ntBASIC19.25■□□□□ 0.67
COL2A1P02458 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC19.25■□□□□ 0.67
COL2A1P02458 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL2A1P02458 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC19.25■□□□□ 0.67
COL2A1P02458 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC19.25■□□□□ 0.67
COL2A1P02458 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL2A1P02458 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms