Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AC025263.3-201ENST00000622965 1396 ntBASIC23.17■■□□□ 1.3
MSH5O43196 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
MSH5O43196 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
MSH5O43196 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
MSH5O43196 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
MSH5O43196 ABCD1P5-201ENST00000445663 754 ntBASIC23.17■■□□□ 1.3
MSH5O43196 MEG3-211ENST00000452514 461 ntTSL 3 BASIC23.17■■□□□ 1.3
MSH5O43196 AC104116.1-201ENST00000504539 411 ntTSL 5 BASIC23.17■■□□□ 1.3
MSH5O43196 AC108475.1-201ENST00000507880 950 ntBASIC23.17■■□□□ 1.3
MSH5O43196 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC23.17■■□□□ 1.3
MSH5O43196 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC23.17■■□□□ 1.3
MSH5O43196 AC089998.4-201ENST00000552532 459 ntTSL 3 BASIC23.17■■□□□ 1.3
MSH5O43196 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
MSH5O43196 AC105339.3-201ENST00000560043 636 ntBASIC23.17■■□□□ 1.3
MSH5O43196 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC23.17■■□□□ 1.3
MSH5O43196 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC23.17■■□□□ 1.3
MSH5O43196 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC23.17■■□□□ 1.3
MSH5O43196 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC23.17■■□□□ 1.3
MSH5O43196 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC23.17■■□□□ 1.3
MSH5O43196 AC008735.5-201ENST00000623544 497 ntBASIC23.17■■□□□ 1.3
MSH5O43196 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
MSH5O43196 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
MSH5O43196 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC23.17■■□□□ 1.3
MSH5O43196 COBL-210ENST00000632460 1941 ntTSL 5 BASIC23.17■■□□□ 1.3
MSH5O43196 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
MSH5O43196 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
MSH5O43196 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC23.17■■□□□ 1.3
MSH5O43196 LINC02199-201ENST00000506655 2702 ntBASIC23.17■■□□□ 1.3
MSH5O43196 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
MSH5O43196 FEM1AP3-201ENST00000403722 1741 ntBASIC23.16■■□□□ 1.3
MSH5O43196 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
MSH5O43196 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC23.16■■□□□ 1.3
MSH5O43196 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
MSH5O43196 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC23.16■■□□□ 1.3
MSH5O43196 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
MSH5O43196 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
MSH5O43196 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
MSH5O43196 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
MSH5O43196 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
MSH5O43196 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
MSH5O43196 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
MSH5O43196 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
MSH5O43196 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
MSH5O43196 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
MSH5O43196 OR4C5-201ENST00000319813 981 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
MSH5O43196 BEX3-201ENST00000361298 921 ntTSL 2 BASIC23.16■■□□□ 1.3
MSH5O43196 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC23.16■■□□□ 1.3
MSH5O43196 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC23.16■■□□□ 1.3
MSH5O43196 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
MSH5O43196 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
MSH5O43196 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC23.16■■□□□ 1.3
MSH5O43196 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC23.16■■□□□ 1.3
MSH5O43196 AC068472.1-201ENST00000474589 881 ntBASIC23.16■■□□□ 1.3
MSH5O43196 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC23.16■■□□□ 1.3
MSH5O43196 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
MSH5O43196 LINC02251-201ENST00000554798 1224 ntTSL 5 BASIC23.16■■□□□ 1.3
MSH5O43196 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC23.16■■□□□ 1.3
MSH5O43196 MTDHP5-201ENST00000598980 586 ntBASIC23.16■■□□□ 1.3
MSH5O43196 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC23.16■■□□□ 1.3
MSH5O43196 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
MSH5O43196 AC025062.2-201ENST00000605477 670 ntBASIC23.16■■□□□ 1.3
MSH5O43196 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC23.16■■□□□ 1.3
MSH5O43196 CBR3-AS1-215ENST00000624086 594 ntTSL 5 BASIC23.16■■□□□ 1.3
MSH5O43196 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC23.16■■□□□ 1.3
MSH5O43196 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC23.16■■□□□ 1.3
MSH5O43196 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
MSH5O43196 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC23.16■■□□□ 1.3
MSH5O43196 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
MSH5O43196 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
MSH5O43196 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
MSH5O43196 KRT8P50-201ENST00000562022 1438 ntBASIC23.16■■□□□ 1.3
MSH5O43196 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
MSH5O43196 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
MSH5O43196 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
MSH5O43196 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
MSH5O43196 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC23.15■■□□□ 1.3
MSH5O43196 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
MSH5O43196 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
MSH5O43196 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC23.15■■□□□ 1.3
MSH5O43196 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
MSH5O43196 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
MSH5O43196 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
MSH5O43196 AC099343.3-201ENST00000605834 2503 ntBASIC23.15■■□□□ 1.3
MSH5O43196 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
MSH5O43196 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
MSH5O43196 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
MSH5O43196 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
MSH5O43196 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
MSH5O43196 LGALS14-201ENST00000360675 773 ntAPPRIS P3 TSL 3 BASIC23.15■■□□□ 1.3
MSH5O43196 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC23.15■■□□□ 1.3
MSH5O43196 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
MSH5O43196 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC23.15■■□□□ 1.3
MSH5O43196 VPS26BP1-201ENST00000417155 755 ntBASIC23.15■■□□□ 1.3
MSH5O43196 DSTNP1-201ENST00000419906 465 ntBASIC23.15■■□□□ 1.3
MSH5O43196 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
MSH5O43196 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC23.15■■□□□ 1.3
MSH5O43196 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC23.15■■□□□ 1.3
MSH5O43196 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC23.15■■□□□ 1.3
MSH5O43196 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
MSH5O43196 AC139103.1-201ENST00000534696 1030 ntBASIC23.15■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms