Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 U91328.1-201ENST00000437528 223 ntBASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 AC140912.1-201ENST00000577171 1054 ntBASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 CETN4P-206ENST00000642099 2168 ntBASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 AL021920.2-201ENST00000624828 1351 ntBASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 TMPRSS11CP-201ENST00000453277 683 ntBASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 AC009407.1-201ENST00000568958 598 ntBASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 CYP2A7P1-201ENST00000595391 815 ntBASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 TEX28P1-201ENST00000613479 1221 ntBASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 TEX28P2-201ENST00000617764 1221 ntBASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 LINC00895-201ENST00000629028 1637 ntBASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 AC011270.2-201ENST00000624293 2550 ntBASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
PCDHGA1Q9Y5H4 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 FAM220BP-201ENST00000377689 816 ntBASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 API5-211ENST00000534695 560 ntTSL 5 BASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 STOM-203ENST00000538954 1257 ntTSL 5 BASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 AL132655.2-201ENST00000596276 594 ntBASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC16.02■□□□□ 0.16
PCDHGA1Q9Y5H4 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms