Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 KRT18P67-201ENST00000432816 1264 ntBASIC13.59□□□□□ -0.23
FOXA2Q9Y261 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 AL160237.2-201ENST00000556165 472 ntBASIC13.59□□□□□ -0.23
FOXA2Q9Y261 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 AC021087.4-201ENST00000563761 564 ntBASIC13.59□□□□□ -0.23
FOXA2Q9Y261 AC139887.3-201ENST00000568585 713 ntBASIC13.59□□□□□ -0.23
FOXA2Q9Y261 PNMT-203ENST00000581428 677 ntTSL 2 BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 CYB561-217ENST00000582997 877 ntTSL 5 BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 CALM3-211ENST00000598871 561 ntTSL 4 BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 AC013467.2-201ENST00000605472 835 ntBASIC13.59□□□□□ -0.23
FOXA2Q9Y261 TP73-AS1-207ENST00000624167 988 ntBASIC13.59□□□□□ -0.23
FOXA2Q9Y261 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 VPS51-217ENST00000639871 243 ntTSL 5 BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA2Q9Y261 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC13.58□□□□□ -0.23
FOXA2Q9Y261 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.23
FOXA2Q9Y261 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
FOXA2Q9Y261 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
FOXA2Q9Y261 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
FOXA2Q9Y261 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
FOXA2Q9Y261 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC13.58□□□□□ -0.23
FOXA2Q9Y261 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC13.58□□□□□ -0.23
FOXA2Q9Y261 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 LAGE3P1-201ENST00000425356 484 ntBASIC13.58□□□□□ -0.24
FOXA2Q9Y261 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 RNPS1P1-201ENST00000507437 918 ntBASIC13.58□□□□□ -0.24
FOXA2Q9Y261 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 AP002469.2-201ENST00000531724 424 ntBASIC13.58□□□□□ -0.24
FOXA2Q9Y261 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 PC-204ENST00000524491 1714 ntTSL 2 BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 ME2P1-201ENST00000426028 1970 ntBASIC13.58□□□□□ -0.24
FOXA2Q9Y261 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 AL662844.4-201ENST00000606367 2838 ntBASIC13.58□□□□□ -0.24
FOXA2Q9Y261 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 MTHFR-217ENST00000641820 1569 ntBASIC13.58□□□□□ -0.24
FOXA2Q9Y261 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
FOXA2Q9Y261 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms