Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC20.1■□□□□ 0.81
ZC3H4Q9UPT8 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 RBM39-205ENST00000397370 612 ntTSL 2 BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 CROCCP4-201ENST00000457096 498 ntBASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 SDHAP3-202ENST00000515467 728 ntBASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 RNA5SP412-201ENST00000516234 123 ntBASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 FTH1-202ENST00000526640 786 ntTSL 2 BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 MIR4492-201ENST00000581627 80 ntBASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ZC3H4Q9UPT8 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.81
ZC3H4Q9UPT8 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC20.08■□□□□ 0.81
ZC3H4Q9UPT8 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
ZC3H4Q9UPT8 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
ZC3H4Q9UPT8 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
ZC3H4Q9UPT8 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC20.08■□□□□ 0.81
ZC3H4Q9UPT8 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC20.08■□□□□ 0.81
ZC3H4Q9UPT8 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
ZC3H4Q9UPT8 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC20.08■□□□□ 0.81
ZC3H4Q9UPT8 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
ZC3H4Q9UPT8 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC20.08■□□□□ 0.81
ZC3H4Q9UPT8 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
ZC3H4Q9UPT8 AC023310.3-201ENST00000557027 670 ntBASIC20.08■□□□□ 0.81
ZC3H4Q9UPT8 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC20.08■□□□□ 0.81
ZC3H4Q9UPT8 AC100756.1-201ENST00000562736 682 ntBASIC20.08■□□□□ 0.81
ZC3H4Q9UPT8 AC138749.3-201ENST00000567691 622 ntBASIC20.08■□□□□ 0.81
ZC3H4Q9UPT8 ARL16-210ENST00000574938 751 ntTSL 2 BASIC20.08■□□□□ 0.81
ZC3H4Q9UPT8 MNT-208ENST00000575394 606 ntTSL 4 BASIC20.08■□□□□ 0.81
ZC3H4Q9UPT8 BTNL10-201ENST00000595971 695 ntBASIC20.08■□□□□ 0.81
ZC3H4Q9UPT8 AC116165.1-201ENST00000611806 668 ntBASIC20.08■□□□□ 0.81
ZC3H4Q9UPT8 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC20.08■□□□□ 0.81
ZC3H4Q9UPT8 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
ZC3H4Q9UPT8 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
ZC3H4Q9UPT8 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
ZC3H4Q9UPT8 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
ZC3H4Q9UPT8 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
ZC3H4Q9UPT8 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.8
ZC3H4Q9UPT8 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ZC3H4Q9UPT8 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC20.07■□□□□ 0.8
ZC3H4Q9UPT8 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC20.07■□□□□ 0.8
ZC3H4Q9UPT8 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ZC3H4Q9UPT8 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ZC3H4Q9UPT8 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC20.07■□□□□ 0.8
ZC3H4Q9UPT8 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC20.07■□□□□ 0.8
ZC3H4Q9UPT8 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC20.07■□□□□ 0.8
ZC3H4Q9UPT8 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC20.07■□□□□ 0.8
ZC3H4Q9UPT8 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC20.07■□□□□ 0.8
ZC3H4Q9UPT8 CYP2A7P1-201ENST00000595391 815 ntBASIC20.07■□□□□ 0.8
ZC3H4Q9UPT8 RPS24-214ENST00000613865 538 ntTSL 5 BASIC20.07■□□□□ 0.8
ZC3H4Q9UPT8 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
ZC3H4Q9UPT8 AL139099.5-201ENST00000635274 300 ntBASIC20.07■□□□□ 0.8
ZC3H4Q9UPT8 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
ZC3H4Q9UPT8 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
ZC3H4Q9UPT8 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
ZC3H4Q9UPT8 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC20.07■□□□□ 0.8
ZC3H4Q9UPT8 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ZC3H4Q9UPT8 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
ZC3H4Q9UPT8 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
ZC3H4Q9UPT8 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
ZC3H4Q9UPT8 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ZC3H4Q9UPT8 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
ZC3H4Q9UPT8 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ZC3H4Q9UPT8 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC20.06■□□□□ 0.8
ZC3H4Q9UPT8 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC20.06■□□□□ 0.8
ZC3H4Q9UPT8 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZC3H4Q9UPT8 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms