Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
CCDC28BQ9BUN5 DBET-201ENST00000630918 3363 ntBASIC16.35■□□□□ 0.21
CCDC28BQ9BUN5 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC28BQ9BUN5 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC28BQ9BUN5 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
CCDC28BQ9BUN5 AC092647.4-201ENST00000457211 535 ntBASIC16.35■□□□□ 0.21
CCDC28BQ9BUN5 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC16.35■□□□□ 0.21
CCDC28BQ9BUN5 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC28BQ9BUN5 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC16.35■□□□□ 0.21
CCDC28BQ9BUN5 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC16.35■□□□□ 0.21
CCDC28BQ9BUN5 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC16.35■□□□□ 0.21
CCDC28BQ9BUN5 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC16.35■□□□□ 0.21
CCDC28BQ9BUN5 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC16.35■□□□□ 0.21
CCDC28BQ9BUN5 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC28BQ9BUN5 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC28BQ9BUN5 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC28BQ9BUN5 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.35■□□□□ 0.21
CCDC28BQ9BUN5 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC28BQ9BUN5 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC28BQ9BUN5 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC28BQ9BUN5 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC28BQ9BUN5 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC28BQ9BUN5 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.35■□□□□ 0.21
CCDC28BQ9BUN5 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC28BQ9BUN5 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC28BQ9BUN5 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC16.35■□□□□ 0.21
CCDC28BQ9BUN5 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.35■□□□□ 0.21
CCDC28BQ9BUN5 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC28BQ9BUN5 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 AK4P3-201ENST00000418260 669 ntBASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 AL020989.1-201ENST00000422979 469 ntBASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 VENTXP7-201ENST00000475503 772 ntBASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 AC144831.1-201ENST00000573312 2656 ntBASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16.34■□□□□ 0.21
CCDC28BQ9BUN5 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
CCDC28BQ9BUN5 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.33■□□□□ 0.21
CCDC28BQ9BUN5 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.33■□□□□ 0.21
CCDC28BQ9BUN5 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.21
CCDC28BQ9BUN5 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CCDC28BQ9BUN5 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CCDC28BQ9BUN5 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
CCDC28BQ9BUN5 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC28BQ9BUN5 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC28BQ9BUN5 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC28BQ9BUN5 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC16.33■□□□□ 0.2
CCDC28BQ9BUN5 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC28BQ9BUN5 AL596275.1-201ENST00000423464 877 ntBASIC16.33■□□□□ 0.2
CCDC28BQ9BUN5 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.33■□□□□ 0.2
CCDC28BQ9BUN5 AC012306.2-201ENST00000609350 630 ntBASIC16.33■□□□□ 0.2
CCDC28BQ9BUN5 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.33■□□□□ 0.2
CCDC28BQ9BUN5 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC28BQ9BUN5 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.33■□□□□ 0.2
CCDC28BQ9BUN5 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC28BQ9BUN5 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC28BQ9BUN5 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC28BQ9BUN5 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC28BQ9BUN5 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC28BQ9BUN5 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC28BQ9BUN5 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC28BQ9BUN5 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.33■□□□□ 0.2
CCDC28BQ9BUN5 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC28BQ9BUN5 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms