Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AL391256.1-201ENST00000443260 1855 ntBASIC16.65■□□□□ 0.26
VPS35Q96QK1 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.65■□□□□ 0.26
VPS35Q96QK1 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
VPS35Q96QK1 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS35Q96QK1 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
VPS35Q96QK1 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
VPS35Q96QK1 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS35Q96QK1 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.64■□□□□ 0.25
VPS35Q96QK1 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS35Q96QK1 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.64■□□□□ 0.25
VPS35Q96QK1 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS35Q96QK1 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
VPS35Q96QK1 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS35Q96QK1 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS35Q96QK1 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
VPS35Q96QK1 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.64■□□□□ 0.25
VPS35Q96QK1 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC16.64■□□□□ 0.25
VPS35Q96QK1 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC16.64■□□□□ 0.25
VPS35Q96QK1 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC16.64■□□□□ 0.25
VPS35Q96QK1 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC16.64■□□□□ 0.25
VPS35Q96QK1 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC16.64■□□□□ 0.25
VPS35Q96QK1 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS35Q96QK1 MTDHP5-201ENST00000598980 586 ntBASIC16.64■□□□□ 0.25
VPS35Q96QK1 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.64■□□□□ 0.25
VPS35Q96QK1 AC068137.2-201ENST00000605408 478 ntBASIC16.64■□□□□ 0.25
VPS35Q96QK1 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS35Q96QK1 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS35Q96QK1 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.64■□□□□ 0.25
VPS35Q96QK1 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS35Q96QK1 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
VPS35Q96QK1 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
VPS35Q96QK1 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS35Q96QK1 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS35Q96QK1 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS35Q96QK1 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.64■□□□□ 0.25
VPS35Q96QK1 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS35Q96QK1 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
VPS35Q96QK1 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS35Q96QK1 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS35Q96QK1 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
VPS35Q96QK1 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS35Q96QK1 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
VPS35Q96QK1 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
VPS35Q96QK1 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS35Q96QK1 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS35Q96QK1 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS35Q96QK1 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS35Q96QK1 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
VPS35Q96QK1 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS35Q96QK1 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS35Q96QK1 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.63■□□□□ 0.25
VPS35Q96QK1 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS35Q96QK1 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS35Q96QK1 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS35Q96QK1 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS35Q96QK1 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS35Q96QK1 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS35Q96QK1 AC140658.5-201ENST00000438532 169 ntBASIC16.63■□□□□ 0.25
VPS35Q96QK1 NMU-203ENST00000507338 658 ntTSL 3 BASIC16.63■□□□□ 0.25
VPS35Q96QK1 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS35Q96QK1 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS35Q96QK1 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC16.63■□□□□ 0.25
VPS35Q96QK1 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS35Q96QK1 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
VPS35Q96QK1 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS35Q96QK1 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS35Q96QK1 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS35Q96QK1 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS35Q96QK1 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS35Q96QK1 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS35Q96QK1 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
VPS35Q96QK1 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS35Q96QK1 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS35Q96QK1 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS35Q96QK1 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
VPS35Q96QK1 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
VPS35Q96QK1 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS35Q96QK1 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS35Q96QK1 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS35Q96QK1 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS35Q96QK1 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS35Q96QK1 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS35Q96QK1 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS35Q96QK1 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS35Q96QK1 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
VPS35Q96QK1 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS35Q96QK1 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS35Q96QK1 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS35Q96QK1 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
VPS35Q96QK1 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS35Q96QK1 RNU1-129P-201ENST00000384064 167 ntBASIC16.62■□□□□ 0.25
VPS35Q96QK1 YBX2P1-201ENST00000394192 760 ntBASIC16.62■□□□□ 0.25
VPS35Q96QK1 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
VPS35Q96QK1 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC16.62■□□□□ 0.25
VPS35Q96QK1 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
VPS35Q96QK1 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS35Q96QK1 BX842568.4-201ENST00000421222 227 ntBASIC16.62■□□□□ 0.25
VPS35Q96QK1 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.62■□□□□ 0.25
VPS35Q96QK1 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC16.62■□□□□ 0.25
VPS35Q96QK1 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms