Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CHFRQ96EP1 BANF1P1-201ENST00000553684 263 ntBASIC16.97■□□□□ 0.31
CHFRQ96EP1 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC16.97■□□□□ 0.31
CHFRQ96EP1 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CHFRQ96EP1 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC16.97■□□□□ 0.31
CHFRQ96EP1 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
CHFRQ96EP1 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CHFRQ96EP1 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CHFRQ96EP1 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CHFRQ96EP1 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.97■□□□□ 0.31
CHFRQ96EP1 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CHFRQ96EP1 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CHFRQ96EP1 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
CHFRQ96EP1 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.97■□□□□ 0.31
CHFRQ96EP1 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CHFRQ96EP1 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.97■□□□□ 0.31
CHFRQ96EP1 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CHFRQ96EP1 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CHFRQ96EP1 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CHFRQ96EP1 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CHFRQ96EP1 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
CHFRQ96EP1 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.97■□□□□ 0.31
CHFRQ96EP1 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CHFRQ96EP1 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CHFRQ96EP1 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC16.96■□□□□ 0.31
CHFRQ96EP1 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
CHFRQ96EP1 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CHFRQ96EP1 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CHFRQ96EP1 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CHFRQ96EP1 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CHFRQ96EP1 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CHFRQ96EP1 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CHFRQ96EP1 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CHFRQ96EP1 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CHFRQ96EP1 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
CHFRQ96EP1 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CHFRQ96EP1 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
CHFRQ96EP1 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CHFRQ96EP1 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.96■□□□□ 0.31
CHFRQ96EP1 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC16.96■□□□□ 0.31
CHFRQ96EP1 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.96■□□□□ 0.31
CHFRQ96EP1 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CHFRQ96EP1 SPTLC1P1-201ENST00000447199 261 ntBASIC16.96■□□□□ 0.31
CHFRQ96EP1 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CHFRQ96EP1 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC16.96■□□□□ 0.31
CHFRQ96EP1 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC16.96■□□□□ 0.31
CHFRQ96EP1 PRYP6-201ENST00000514804 343 ntBASIC16.96■□□□□ 0.31
CHFRQ96EP1 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC16.96■□□□□ 0.31
CHFRQ96EP1 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC16.96■□□□□ 0.31
CHFRQ96EP1 MPI-209ENST00000564003 1195 ntTSL 2 BASIC16.96■□□□□ 0.31
CHFRQ96EP1 COX11-202ENST00000571584 1108 ntTSL 2 BASIC16.96■□□□□ 0.31
CHFRQ96EP1 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC16.96■□□□□ 0.31
CHFRQ96EP1 GPER1-207ENST00000619052 571 ntTSL 2 BASIC16.96■□□□□ 0.31
CHFRQ96EP1 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.96■□□□□ 0.31
CHFRQ96EP1 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.96■□□□□ 0.31
CHFRQ96EP1 AC022144.1-201ENST00000602255 1580 ntBASIC16.96■□□□□ 0.31
CHFRQ96EP1 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CHFRQ96EP1 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CHFRQ96EP1 AC073439.1-201ENST00000624121 1774 ntBASIC16.96■□□□□ 0.31
CHFRQ96EP1 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.96■□□□□ 0.31
CHFRQ96EP1 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
CHFRQ96EP1 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
CHFRQ96EP1 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
CHFRQ96EP1 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.96■□□□□ 0.3
CHFRQ96EP1 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.96■□□□□ 0.3
CHFRQ96EP1 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.3
CHFRQ96EP1 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC16.96■□□□□ 0.3
CHFRQ96EP1 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
CHFRQ96EP1 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC16.96■□□□□ 0.3
CHFRQ96EP1 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHFRQ96EP1 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHFRQ96EP1 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHFRQ96EP1 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CHFRQ96EP1 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHFRQ96EP1 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
CHFRQ96EP1 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHFRQ96EP1 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHFRQ96EP1 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHFRQ96EP1 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHFRQ96EP1 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CHFRQ96EP1 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.95■□□□□ 0.3
CHFRQ96EP1 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
CHFRQ96EP1 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC16.95■□□□□ 0.3
CHFRQ96EP1 PP12613-201ENST00000424958 2230 ntBASIC16.95■□□□□ 0.3
CHFRQ96EP1 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CHFRQ96EP1 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHFRQ96EP1 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHFRQ96EP1 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHFRQ96EP1 GRAP-202ENST00000395635 834 ntTSL 2 BASIC16.95■□□□□ 0.3
CHFRQ96EP1 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC16.95■□□□□ 0.3
CHFRQ96EP1 AC009407.1-201ENST00000568958 598 ntBASIC16.95■□□□□ 0.3
CHFRQ96EP1 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
CHFRQ96EP1 CECR7-204ENST00000609932 568 ntTSL 2 BASIC16.95■□□□□ 0.3
CHFRQ96EP1 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.95■□□□□ 0.3
CHFRQ96EP1 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHFRQ96EP1 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHFRQ96EP1 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHFRQ96EP1 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHFRQ96EP1 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC16.95■□□□□ 0.3
CHFRQ96EP1 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms