Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 AC008403.3-201ENST00000598924 454 ntBASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 AC006486.2-201ENST00000624246 2199 ntBASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC28AQ8IWP9 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 RCC2P3-201ENST00000418112 1537 ntBASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 PRSS44-201ENST00000515154 1146 ntBASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 KLF2-202ENST00000592003 564 ntTSL 3 BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 HAL-202ENST00000538703 2637 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28AQ8IWP9 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28AQ8IWP9 KRASP1-201ENST00000407852 552 ntBASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms