Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHD3Q12873 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHD3Q12873 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
CHD3Q12873 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
CHD3Q12873 CD99-202ENST00000381180 530 ntTSL 2 BASIC14.41□□□□□ -0.1
CHD3Q12873 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHD3Q12873 SLC25A6P2-201ENST00000497974 877 ntBASIC14.41□□□□□ -0.1
CHD3Q12873 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC14.41□□□□□ -0.1
CHD3Q12873 CCDC74BP1-201ENST00000508880 1123 ntBASIC14.41□□□□□ -0.1
CHD3Q12873 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC14.41□□□□□ -0.1
CHD3Q12873 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC14.41□□□□□ -0.1
CHD3Q12873 METTL23-205ENST00000588302 925 ntTSL 5 BASIC14.41□□□□□ -0.1
CHD3Q12873 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC14.41□□□□□ -0.1
CHD3Q12873 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHD3Q12873 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC14.41□□□□□ -0.1
CHD3Q12873 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHD3Q12873 LTF-203ENST00000426532 2494 ntTSL 2 BASIC14.41□□□□□ -0.1
CHD3Q12873 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHD3Q12873 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHD3Q12873 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC14.41□□□□□ -0.1
CHD3Q12873 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CHD3Q12873 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC14.41□□□□□ -0.1
CHD3Q12873 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC14.41□□□□□ -0.1
CHD3Q12873 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHD3Q12873 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHD3Q12873 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHD3Q12873 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CHD3Q12873 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHD3Q12873 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHD3Q12873 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC14.41□□□□□ -0.1
CHD3Q12873 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHD3Q12873 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CHD3Q12873 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHD3Q12873 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHD3Q12873 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CHD3Q12873 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
CHD3Q12873 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CHD3Q12873 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC14.41□□□□□ -0.1
CHD3Q12873 SPDYE11-202ENST00000450699 704 ntBASIC14.41□□□□□ -0.1
CHD3Q12873 SPDYE9P-201ENST00000570642 692 ntBASIC14.41□□□□□ -0.1
CHD3Q12873 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC14.41□□□□□ -0.1
CHD3Q12873 SPDYE10P-202ENST00000612005 668 ntBASIC14.41□□□□□ -0.1
CHD3Q12873 SPDYE8P-202ENST00000612377 668 ntBASIC14.41□□□□□ -0.1
CHD3Q12873 REXO1L3P-201ENST00000622202 1288 ntBASIC14.41□□□□□ -0.1
CHD3Q12873 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
CHD3Q12873 AL118508.1-201ENST00000613502 2345 ntBASIC14.41□□□□□ -0.1
CHD3Q12873 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CHD3Q12873 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CHD3Q12873 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CHD3Q12873 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CHD3Q12873 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
CHD3Q12873 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CHD3Q12873 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CHD3Q12873 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC14.4□□□□□ -0.1
CHD3Q12873 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CHD3Q12873 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CHD3Q12873 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CHD3Q12873 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CHD3Q12873 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CHD3Q12873 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CHD3Q12873 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
CHD3Q12873 AL135744.1-201ENST00000565098 629 ntBASIC14.4□□□□□ -0.1
CHD3Q12873 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CHD3Q12873 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC14.4□□□□□ -0.1
CHD3Q12873 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC14.4□□□□□ -0.1
CHD3Q12873 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CHD3Q12873 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC14.4□□□□□ -0.1
CHD3Q12873 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CHD3Q12873 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CHD3Q12873 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CHD3Q12873 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CHD3Q12873 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CHD3Q12873 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CHD3Q12873 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC14.4□□□□□ -0.1
CHD3Q12873 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
CHD3Q12873 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC14.4□□□□□ -0.1
CHD3Q12873 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.11
CHD3Q12873 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.11
CHD3Q12873 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC14.4□□□□□ -0.11
CHD3Q12873 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CHD3Q12873 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CHD3Q12873 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CHD3Q12873 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC14.39□□□□□ -0.11
CHD3Q12873 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CHD3Q12873 METTL26-204ENST00000397665 558 ntTSL 2 BASIC14.39□□□□□ -0.11
CHD3Q12873 AC005034.1-201ENST00000426657 489 ntBASIC14.39□□□□□ -0.11
CHD3Q12873 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CHD3Q12873 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
CHD3Q12873 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CHD3Q12873 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
CHD3Q12873 AC109322.1-201ENST00000524499 1264 ntBASIC14.39□□□□□ -0.11
CHD3Q12873 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC14.39□□□□□ -0.11
CHD3Q12873 DUX4L17-201ENST00000557360 1267 ntBASIC14.39□□□□□ -0.11
CHD3Q12873 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC14.39□□□□□ -0.11
CHD3Q12873 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CHD3Q12873 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC14.39□□□□□ -0.11
CHD3Q12873 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CHD3Q12873 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CHD3Q12873 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
CHD3Q12873 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms